RNA id: TU150158


Basic Information

Item Value
RNA id TU150158
length 2454
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G111487
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2952608 ~ 2955109 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acacacacacacacacacacacacacacacacacacacaaacacacatgcagaagattacaaataatatattacggtgtaaatcctccatcataacagcaatgctctaagggtccaaacgcgcctggcttttaaagggaatgggagatgatctctgattggttgattgcatgttacgcccaaaacacacctctgattaatgaagacactaagtacaacccttttcaACTATGCCCcctggcgcacggacccttttttcccaCCATCAAACTatcaaaagtggatttggacacgccctaaacacacctgcaccaggcgcttcacgccatgCTTTTGGagcgttaaaatagggcccttggtctcaagaccactttttgaaggtctctgTCTCGTCTCAGAATCAACCACATTTCTATTTAGTGTTGTCTCGGTCTCAAATGAAGAGGACTTATTTCAAGACCTGTGAagacttgcgtcgggctttgtgtTGCGCTGccttgcgctgggtgcaagatagggccccaaaGAGTTTGTCCCAGTCTCGATCCACTCGatttggtgatgacttggtctcggtttaggtggtctcgaCTACAACACTGTTTAAATCTCACATTGGTGCTGTTTGTCCAAGTAAGTTTTCAGGTGCAACATCTTCTTGGCCTCTTTACGTCTTGAatcacattcatttttaaaagaCTTATGAGAAATAAAAGAAGGGAAACACATTTGGCGCCTGGAAAACGTCGGCACCTTTAAATAACCATTATGTTTTCCTCTGGTCGAATTTAAcccatttttaaagttttttttaatcaaaaataCGAGTTTCTTTCAAACTAATTGCCCAAAAATTACACAGACGTTCCAAACACGAAATGGGCTGTAATTATGCATCAACATacgttcctctgatcttaaataTTTGCTAAAATATTTCATAAATTAGGCGTAATTTGATatgaattagttttttttgaCTATGAATTCCAaaatgaagtttaaaactaGCGGTAATAAGTTGTAATgaagttggctaagaagatgtaacacagaattggtTGAAGATGtatactttatgctttataaaaCAACAAACGAGGGATGAACTATGAAAAACAACAGCCCACAAGTTCAACTTAATTGCGGCTGCGTTATCCGAACAGTTTTTAAATCGTACGTTTTGATTTTACAAGAGAAAAGACTTCAAGCAAGAAGACTTACTGGTTGTTTTTAGCCAAATGCACATCTGGTTTAACTTCTGTTGTGATAAAGAGCAGCACACAGCCACTgccatacattttcttttatagGAAGCATCTTTGATAATCACAAACTGACTCTTTTGAGACGATAAACCAAACAAGGGGTTTCCAAATTGTATCCTCATTTCTGTATCTTGTTAGTAATCATTGTAAACATAGTTTTTATTCCAGTTTTTTGCAGCTACAATCAATAGTCGTTCTAAAGAAAGCTTGATGTCGGTACGATTTGACAATCAGTAAGAACTAGAAAGAGCACTCGGAGAGTCCGCCAAAGGCCACGCTCTTATCGCACAATGTTAACGACCGTTTAAACCTGCTATGTGATTCAAATCTGCTCCAAATGTGTATGGGTTCATCCTCGGCCCATGCTTCATctttccaccaagtttcatggaAATCGGGCCAAAGGTTTTTCTGTAATCcggctgacagacagacaacaaactAACCAACAATCCAAACCGGaaacttaaaggggaactatgcaggtttttagcttaattgactttaactgaacagcttcggagtcattggaatggttatgtgactttttttcgggttgaatggtggtcgtctcgcttccccctagcgcctgTCAGCATCAGGcagtatcgcgtgatatcaggtctcgccatgtaacaaattgcttcatgGCCctgcccattcaggaaccggctaacaagtttttcacactatcgtcatggctgagccggcaaaaaagaagcagaaagctaggaaagcatggaaagcattgtcggaggaacagagaaagaggaaactgcagactgaccgagagaggagtcagacacgagtaaacataggagctgccaaatatctattctgaagctaTAGGGGGAGCTCTgtagagaaacctgccagcaaacagagagaaaacagcaaagaaatgGCTAAAACTGCATAGCACCCCTTTAAACTCCttggttttatatatataaagctgTGAAATGTGGAGGCTAACCAGTTAGCACTGTTAGCACTGACTAGTTAGGAATCAGCTACGAGACGGAGAACCACTTTGCGGTACGAAGACGAGGGAAACCTCAGACTGATGTTTGAACTGATCTGATCAGACTggaaatctttttatttttttgtgctttgTATGTGAACGCTGCAGCGTCAGGGATTGTATGGCAttaattgttttaaatgaaatgtttcTGTTGGCC

Function

GO: NA

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150141 lncRNA upstream 4123 2942775 ~ 2948485 (+) True G111476
TU150138 lncRNA upstream 5731 2942775 ~ 2946877 (+) False G111476
TU150137 lncRNA upstream 21163 2910549 ~ 2931445 (+) False G111475
TU150143 lncRNA upstream 21986 2914458 ~ 2930622 (+) True G111478
TU150148 lncRNA upstream 25460 2924392 ~ 2927148 (+) False G111483
TU150150 lncRNA downstream 65484 3020593 ~ 3066029 (+) False G111484
TU150168 lncRNA downstream 67932 3023041 ~ 3025573 (+) True G111495
TU150154 lncRNA downstream 91376 3046485 ~ 3098747 (+) True G111485
TU150156 lncRNA downstream 91376 3046485 ~ 3066464 (+) False G111485
TU150172 lncRNA downstream 91830 3046939 ~ 3047847 (+) True G111498
XM_039816303.1 mRNA upstream 125754 2787779 ~ 2826854 (+) True rasal2
XM_039816548.1 mRNA upstream 201036 2749854 ~ 2751572 (+) True LOC120568825
XM_039816549.1 mRNA upstream 218710 2732606 ~ 2733898 (+) True LOC120568826
XM_039816589.1 mRNA upstream 263392 2665824 ~ 2689216 (+) True nmnat2
XM_039816090.1 mRNA upstream 487768 2463673 ~ 2464840 (+) True LOC120568517
XM_039815924.1 mRNA downstream 343755 3298864 ~ 3304226 (+) True ptmab
XM_039814780.1 mRNA downstream 432945 3388054 ~ 3398106 (+) True LOC120567769
XM_039815755.1 mRNA downstream 536480 3491589 ~ 3506128 (+) True LOC120568331
XM_039815754.1 mRNA downstream 556520 3511629 ~ 3525115 (+) False LOC120568327
XM_039816094.1 mRNA downstream 585878 3540987 ~ 3552017 (+) True LOC120568521
TU150157 other upstream 11760 2938149 ~ 2940848 (+) True G111486
TU150110 other upstream 128020 2816944 ~ 2824588 (+) True G111452
TU150017 other upstream 316565 2572188 ~ 2636043 (+) True G111404
TU150165 other downstream 61849 3016958 ~ 3075901 (+) True G111494
TU150153 other downstream 65484 3020593 ~ 3021258 (+) True G111484
TU150236 other downstream 432985 3388094 ~ 3399183 (+) False LOC120567769
TU150599 other downstream 545570 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other downstream 556544 3511653 ~ 3525049 (+) True LOC120568327

Expression Profile