RNA id: TU150306


Basic Information

Item Value
RNA id TU150306
length 1011
lncRNA type read_through
GC content 0.36
exon number 3
gene id G111578
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2779482 ~ 2887881 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTAACTCTTAGACTTATTttgtctccatgtttgttgctgAGAGCTGATTGTTGTGACATTTCTTCACTGCACAGAGatcagctgtcagtcaaacattatgggatgtcctttgacatcttgtcattagttgtgtaaatgtttgagtttcTTTAGGTGGTGCTCCTTCCTGTGTCTGTTTAGCCACGGAGGCTATCACTGCTCATGATTGTTGACTTGAACTGAGAATGAAAACTTCTCTactctctaaatgttttaatatttgtttatatgtatttgtatgttgtttCTCTTCCACATgggtgtaacacacacacacacacacactctcaccagATCGCCTTTATTCTCTTTACTTTGTTCTCTTTAAGAAATCTATAATCACATGTATCTGTTTAACCTGATCATAATCAAAAGAGATTATTCAGTATTCTCTTCAACCTATCTGAGGGTCAAACACATTGATTGTGTGGATGAAGTGAATCTGTAAATGTAATCGTTGAATTATATTCACTTATGTTTGTATTGCTATTTTtaatgtaataaaatgtttaattatgAAGTATTagactgttgtgtgtgtctttcagaGGTTTCTAAGATGAGTTCTTTATCTTaatatttgtaatttattttgcacaaaacctccactacattaatctgttaatctgacagctttagttactctttcctttttctttttaaccatgTGTAGGTTGGTTCAGGATGATGTTACTTCAGTTTTTTCTGTTGTATAAAACATGCAGTCAATTGATCATTGCGTGACATTTGAACCTCATTTTTGGTGCAACGCATGTAgtcctactgagcatgtagtcttacctagctactgagcatgtagtcttacctagctactgagcatgtagtccttacctagctactgagcatgtagtcttacctagctactgagcatgtagtccttacctagctactgagcatgtagtcttacctagctactgagcatgtagtccttacctagctactgagcatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150363 lncRNA downstream 7236 2768835 ~ 2772246 (-) True G111615
TU150359 lncRNA downstream 22144 2751371 ~ 2757338 (-) True G111611
TU150356 lncRNA downstream 27705 2738348 ~ 2751777 (-) True G111609
TU150325 lncRNA downstream 28728 2732552 ~ 2750754 (-) False G111579
TU150324 lncRNA downstream 28728 2737207 ~ 2750754 (-) False G111579
TU150381 lncRNA upstream 8116 2895997 ~ 2896199 (-) True G111632
TU150383 lncRNA upstream 10334 2898215 ~ 2900223 (-) False LOC120568519
TU150390 lncRNA upstream 44488 2932369 ~ 3010514 (-) False G111638
TU150391 lncRNA upstream 44488 2932369 ~ 3010514 (-) False G111638
TU150394 lncRNA upstream 44488 2932369 ~ 3010514 (-) False G111638
XM_039816547.1 mRNA downstream 50936 2703359 ~ 2728546 (-) True lamc2
XM_039816622.1 mRNA downstream 116717 2625838 ~ 2662765 (-) False smg7
XM_039816623.1 mRNA downstream 116717 2625838 ~ 2662765 (-) False smg7
XM_039816621.1 mRNA downstream 116717 2625838 ~ 2662765 (-) True smg7
XM_039816091.1 mRNA downstream 178005 2518851 ~ 2601477 (-) True lamc1
XM_039816092.1 mRNA upstream 11641 2899522 ~ 3142454 (-) True LOC120568519
XM_039815187.1 mRNA upstream 270321 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 270321 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 270321 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 270321 3158202 ~ 3177928 (-) False LOC120568011
TU150296 other downstream 201468 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 391185 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 936488 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 946387 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 957932 1820750 ~ 1821550 (-) True LOC120567887
TU150424 other upstream 97451 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other upstream 97451 2985332 ~ 2991846 (-) False LOC120568519
XR_005640646.1 other upstream 316406 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 426765 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 1147661 4035542 ~ 4036963 (-) True G111942

Expression Profile