RNA id: TU150375


Basic Information

Item Value
RNA id TU150375
length 1677
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G111626
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2843728 ~ 2847386 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACTACTCTCTGATTGCTGATGTCCCTGCTGGTTGACGTTTTGTGTTTAGACTTGTATGTGGTTGGAGGTTGAGGACCTTAGTGGGTGTAACCAACGAGGTGAAATCAGAGCTGACCGGCCCCGTTGACTGCAGAAACACATGCTGTTCAGAACAGGCGTTGTCACTGAGAACAGAAATGGCgcagaaaggagttcagctggacAGGGAGaccttctcttgttccatctgtctggatctactgaaggatccggtgactacttcctgtggacacagctactgcatgaactCTATTAAAAGCCACTGGGATAAAGAGGATCATAagaacatccacagctgtcctcagtGCAGGCAGACGTTCAGACcgaggcctgtcctgctgaaaaacaccatgttagtAGATCACTGCTCATGATGTTTGTTGACCTGAACTGAGAATGAAAACTGACTATTTTataccagcttgtgtttctttagtTGGGGAACATCATAATGAGGCTGGAGGTGTTGATCACAGTAAGACATCAGACACCTCAAACAGGACTTGATGGCTTTCAGTTTTCTCccagtgcagacatcacaggctACATCTTCAGCTCCtgcatagcagtgatcagcaggagcagcttggagtccagtcttcttcagctcctccactgaTATCCTGAAGGAGCGTCACCTAAAgaaactcaaacatttacacaactAATGACAAGATGTCAAAGGACATCCCATagtttgactgacagctgatCTCTGTTCAGTGGAGAAATGCCACACCAATCAGCTCTCAGCAACCAACATGGAGACTAAATAAGCTGAATAGTGGTTCCATTATAGTTATTATAGCTCTGCTGATCTTCTTGTATGAGACTGCTACATAAAtgtctcctctccacctcccagtaacaacgtccagtcagactctctactcaggacctgaggCCAGacagcacatgtgtcaaactcgaggcccgcgggccaaatccggtaCCTTGCAGGgtatgatccggcccgcatatcaatttaggttcacaaaacattttggcccacctagtttttgtcactttttctgattgtttttgggcgcttcttttctctgatggctgaggaactttctcCTGACTTCTTCAGGActttgtcgaccaaactgttagtgagaagactatatgacacatgtcaaatattatactttttcaataaaataaaagcctatcaataaactaaacctGTCTGGCcattgatgtgattcttattttccagtgtggccctctgggaagtagagtttgacacccctgccatccagtgaatctgtctgggtgactagaataaAGCTGATGAGTTTCTTTAGGTGACTCCTTCCTGTGTCTGTTTAGCCATGGAGGCTATCACTGATCAGGATGATGTTTGTTGACCTGACCTGAGAATGAAAACTTCTCTGCTCCTTAAATGTTGTGCATTAAATTACTTAAAtgcatgtatttgtatgtttctCTTCCACATCATGGGTATAAGAGAGAAATCACCAGATCTCCTTTATCCTCTATactttgtaatttgtaaagaaaTCCATAATCACATGTATCTGTGCATCCTGATGATCAATAAGATTAATCATTGTCCTTATCATAGCTGAGATTTAAACAAAAATCAGACTTTACTGATGGGATGTGAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150338 lncRNA downstream 16572 2784518 ~ 2827156 (-) True G111591
TU150336 lncRNA downstream 34637 2731110 ~ 2809091 (-) True G111589
TU150369 lncRNA downstream 42268 2801000 ~ 2801460 (-) True G111620
TU150337 lncRNA downstream 54455 2783909 ~ 2789273 (-) True G111590
TU150363 lncRNA downstream 71482 2768835 ~ 2772246 (-) True G111615
TU150313 lncRNA upstream 2466 2849852 ~ 2878391 (-) False G111578
TU150381 lncRNA upstream 48611 2895997 ~ 2896199 (-) True G111632
TU150383 lncRNA upstream 50829 2898215 ~ 2900223 (-) False LOC120568519
TU150390 lncRNA upstream 84983 2932369 ~ 3010514 (-) False G111638
TU150391 lncRNA upstream 84983 2932369 ~ 3010514 (-) False G111638
XM_039816547.1 mRNA downstream 115182 2703359 ~ 2728546 (-) True lamc2
XM_039816622.1 mRNA downstream 180963 2625838 ~ 2662765 (-) False smg7
XM_039816623.1 mRNA downstream 180963 2625838 ~ 2662765 (-) False smg7
XM_039816621.1 mRNA downstream 180963 2625838 ~ 2662765 (-) True smg7
XM_039816091.1 mRNA downstream 242251 2518851 ~ 2601477 (-) True lamc1
XM_039815182.1 mRNA upstream 2639 2850025 ~ 2852388 (-) True LOC120568009
XM_039815190.1 mRNA upstream 7537 2854923 ~ 2857623 (-) True LOC120568013
XM_039815183.1 mRNA upstream 12188 2859574 ~ 2863734 (-) True LOC120568010
XM_039815180.1 mRNA upstream 19869 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA upstream 30761 2878147 ~ 2880316 (-) True LOC120568008
TU150296 other downstream 265714 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 455431 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1000734 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1010633 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 1022178 1820750 ~ 1821550 (-) True LOC120567887
TU150424 other upstream 137946 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other upstream 137946 2985332 ~ 2991846 (-) False LOC120568519
XR_005640646.1 other upstream 356901 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 467260 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 1188156 4035542 ~ 4036963 (-) True G111942

Expression Profile