RNA id: TU150424


Basic Information

Item Value
RNA id TU150424
length 1002
RNA type TUCP
GC content 0.58
exon number 7
gene id LOC120568519
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2898215 ~ 3142454 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTTTTAACCGGGGCTCCTGTCTGTTGTTGTGTAAGTTCTCCCGGGGGATTCGGCGTTGTTATTGCCGGTGGACGTGTCAGTTTCCCCTGACAGTCAACCGTTAGTTAACGTTAGTTTGTCGGAGGGGAACTTCGGTGTCTTCGTGGAGATATTTTCTTCGGACTTGGAGCGGTGACAGCGGCTTCAACTGGCGGAATAATCAATACTAGACTGTAgtcctgtgtgtgaggagtgtaTGTGGCTAACACAGAAGTAGCTCCAAaccgagccgagccgagccaGACGCTACCATGCCAGTCAGAAAGAAAGatGCACAGcgagcgctgctgctgctggaggagtACCGGGCCAAGCTGCACCACGCCGAGGATCGGCAGCTCCGACACTCCATCCAGAGGGTCATCGACATCTTCCAGAGCAACCTCTTCCAGGCTCTCATAGATATCCAGGAATTTTACGAAGTGACCTTATTGGACAGTCAGAGATGGGTGGAGTCTTCCAAGGCGGCGGACCCCATGGCGCCCGTCCACCTGTGGGACTTCTCCAGCCTTCAAAGCACAACGGTGACCTCGGACACTCTGCCCAGCCTTAGCACCAGCATCGAGAAGTACAGGCACAACGATGAGGACTCGTCCCCCCAGGACCAGAGCTCCCCCCAGCTGACGGAGGAGGCAGGGGGGCCGGAGCTGGTCCAGGTAGCCGAGAAGAACCTTTCCCAGATCGAGAACGTGCACGGATACGTCACGCACGCCCACATCTCCCCCATGAAGGCCAACCCCCCCCCTGTGGTGGTCAACACCGACAGCCTGGACACGCCTCCATATgtaaaCGGGACGGAGGCTGATTATGAGTATGAGGAGATCACGCTGGAGAGGGGGAATTCGGGGCTGGGCTTCAGCATTGCCGGCGGCACAGACAACCCCCACATCGGCGAAGACCCGAGCATCTTCATCACCAAAGTCATACCTGGAGGAGCCGCGGCTCAGGACGGACGGCTCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU150419 lncRNA downstream 198 2984422 ~ 2985134 (-) True G111650
XR_005640648.1 lncRNA downstream 9851 2967993 ~ 2975481 (-) True LOC120568014
TU150405 lncRNA downstream 32907 2940178 ~ 2952425 (-) True G111642
TU150408 lncRNA downstream 32907 2940178 ~ 2952425 (-) False G111642
TU150412 lncRNA downstream 36848 2946567 ~ 2948484 (-) True G111645
TU150504 lncRNA upstream 109584 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 112605 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 117187 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 119097 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 119190 3261060 ~ 3304338 (-) False G111683
XM_039815180.1 mRNA downstream 95593 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 105016 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 121598 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 127709 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 132944 2850025 ~ 2852388 (-) True LOC120568009
XM_039815187.1 mRNA upstream 16332 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 16332 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 16332 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 16332 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA upstream 16332 3158202 ~ 3177928 (-) False LOC120568011
TU150296 other downstream 407318 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 597035 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1142338 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1152237 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 1163782 1820750 ~ 1821550 (-) True LOC120567887
XR_005640646.1 other upstream 62417 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 172776 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 893672 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1096232 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1096232 4238102 ~ 4238670 (-) False G112043

Expression Profile

TU150424 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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TU150424 Expression in each Bioproject

Bar chart with 6 bars.
TU150424 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000003_00596144_00607951.mRNA True 1020 mRNA 0.44 5 CI01000003 596144 ~ 608038 (+)