RNA id: XM_039816092.1


Basic Information

Item Value
RNA id XM_039816092.1
length 5455
RNA type mRNA
GC content 0.49
exon number 20
gene id LOC120568519
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2898215 ~ 3142454 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTAGAAcctggggaggaggaggaggaggagggaggtagaagaggaagaaaaaaagagcaggattaaagaggaagtagaaggaaaagagaggagggaTTTACGCTCAGAGAAGTTTGACACGAATGCAGCCTGCGCTGGGAATAATACACATAGGCTATAAAGTGTGAGTGCCAGTGCGGGATAAATCAGTCTGTGCTTGGCACGGTTTGAGTTTAGGTGTGCCACCACCACCATGCAGGCTGGACtttgaagtttttatttttttaataaagcctATCTGGAATACGCATCACAGCTTCCACAGAAGCAGCATTGCATGCACCGCCTGGCACTCAGCCGGCACGGAAACGGAGTGTATTTCACATGGAGTTTGGCACACGGAAGGTCCCAGTTGGAGAAAGCTAGATTTTCCACTTTTTTAAAACAGCCACCAGTGTGTCGCCACCCGCGGTCAGCCTGCGCGGTGCACGCCGGGGCAGGGAGCCTCTCTGGCGGGGAAGTACAGCACTGAGACTCGGTAACGCACcggagcttctttttttttttttgtcttctcagGACCCTACTCGCTTTCTGTGATATTACTTTTAACCGGGGCTCCTGTCTGTTGTTGTGTAAGTTCTCCCGGGGGATTCGGCGTTGTTATTGCCGGTGGACGTGTCAGTTTCCCCTGACAGTCAACCGTTAGTTAACGTTAGTTTGTCGGAGGGGAACTTCGGTGTCTTCGTGGAGATATTTTCTTCGGACTTGGAGCGGTGACAGCGGCTTCAACTGGCGGAATAATCAATACTAGACTGTAgtcctgtgtgtgaggagtgtaTGTGGCTAACACAGAAGTAGCTCCAAaccgagccgagccgagccaGACGCTACCATGCCAGTCAGAAAGAAAGatGCACAGcgagcgctgctgctgctggaggagtACCGGGCCAAGCTGCACCACGCCGAGGATCGGCAGCTCCGACACTCCATCCAGAGGGTCATCGACATCTTCCAGAGCAACCTCTTCCAGGCTCTCATAGATATCCAGGAATTTTACGAAGTGACCTTATTGGACAGTCAGAGATGGGTGGAGTCTTCCAAGGCGGCGGACCCCATGGCGCCCGTCCACCTGTGGGACTTCTCCAGCCTTCAAAGCACAACGGTGACCTCGGACACTCTGCCCAGCCTTAGCACCAGCATCGAGAAGTACAGGCACAACGATGAGGACTCGTCCCCCCAGGACCAGAGCTCCCCCCAGCTGACGGAGGAGGCAGGGGGGCCGGAGCTGGTCCAGGTAGCCGAGAAGAACCTTTCCCAGATCGAGAACGTGCACGGATACGTCACGCACGCCCACATCTCCCCCATGAAGCAGGCAGAGGCCAGCCCGCCCTCCTCTCCCATAATCCCTGTGATCCCGGTCTCGCCAATCGCTGCCGAGACCCCCATCATCCCTCCGACGTcacagGCCAACCCCCCCCCTGTGGTGGTCAACACCGACAGCCTGGACACGCCTCCATATgtaaaCGGGACGGAGGCTGATTATGAGTATGAGGAGATCACGCTGGAGAGGGGGAATTCGGGGCTGGGCTTCAGCATTGCCGGCGGCACAGACAACCCCCACATCGGCGAAGACCCGAGCATCTTCATCACCAAAGTCATACCTGGAGGAGCCGCGGCTCAGGACGGACGGCTCAGAAGAAGACGACGATGGCTGTGTACGTTCGAGCTAAAGCCAAAGAGTGAGCTTCAAAGCCCGGCGCGTTTCCACGGGGCCTGGCGTCCTCTACCCAGAAACCCCTGCAGCGTCCTGCTGCCTTTCACTCCTTCATTCATAATGCAGCAGAAAGAGTCTGACGCAGCTGATCCAGGCGATGATGGACAGCCGGCCCTGCCTCAGTGTCAGATTGTTGTGTTGAACAAAACCAAAGAGAGGATGCAGCCGTACCACAACaaccaagaggaggaggacccAGATATCAAAAAGATCAAAAAGGTGCAAAGCTTCATGCGTGGCTGGCTGTGCCGGAGGAAGTGGAAGATCATCGTCCAGGACTACATCAGTTCGCCTCACGCCGAGAGCATGCGGAAGAGGAACCAGATTGTCTTCAACATGGTGGAAGCGGAGACCGAATACGTCCACCAGCTCTCCATCCTGtctctgTCCACTCCGACCCTCAGGGTGGAGAAGAAGGAGCGAGCGAGATTAAAGACGGTGAAGTTCAACGCCAAGTCTCGAGACAGAGGGTCTCTCAATGACAAGCGTAAAAAGAACCTCTTTTCCCGAAAGTTTCCGTTCTACAAGAGCAAAGACGCGAGCGAGCAGGAGACCAGCGATGTGGACCAACACGTCACGTCTAACGCCAGCGATAGTGAAAGTAGCTACCgtgGACAGGAGGAATACGTCCTGTCGTACGAGCCCGTCACTCAGCAGGAAGTGAACTACACCCGTCCCGTCATCATCCTCGGGCCCATGAAGGATCGGATCAACGACGACCTGATCTCAGAGTTCCCCGACAAGTTCGGATCCTGCGTCCCTCACACGACTCGGCCGAAGCGGGACTACGAGGTGGACGGCAGAGACTACCACTTTGTGGTTTCCAGAGAGCAGATGGAGAAGGACATCCAGGACCATAAGTTCATCGAGGCGGGACAGTACAACAACCACCTGTACGGAACCAGCGTGCAGTCGGTCCGACAGGTGGCCGAGAAGGGTAAACACTGTATCCTGGACGTGTCGGGGAACGCCATCAAGAGACTCCAGCTGGCTCAGCTTCATCCCATCGCCGTCTTCATCAAACCCAAATCTGTGGAGAACATCATGGAGATGAACAAGCGTCTGACGGAGGAGCAGGGCAGGAAAACCTTCGACAGAGCCACCAAGCTGGAGCAGGAGTTCACCGAGCACTTCACAGCCGTGGTGACGGGCGACACGCTGGAGGAGATCTACGAGCAGGTGAAGCAGATCATCGAGGAGCAGTCGGGCCCGTTCATCTGGGTCCAGTCCAAGGAGAAGTTATGAGGATCAAAACTCTGTCCTCTCTTTTTAAGATTCActcgcttttattttgaaaaaaaacgaaACGTCGACGCGCATAATAACGGCAGCCTCACTTCCTCCCTCACTTCCTCCACACACCGGCCGACCACAGaccttttattttgtagtttttttttggtttctgtTGCCAGAATAAGActccattgttgttgtttttttgttttttttttcctgaccaGCAAAAGCGAAAGCACACAGGAAGTACGATGACATCACACTCTATGCGGTACAGCTCCTTAATGTTTAAGGGAGGAGAAGACGATAAGAAGACGAGTCCATGACGGTGGCGAGAAGAAAACGTACGAAGAagatttttatctttttaggttgtttttttttccattttgattttttttttttttttttaaagacagagTTTGAGTCTCAGGCAGCGTCTGTCGGAGACACGAAAAAGAGCAAAAACTTTGCACGTTTGAGCTTTAACAGCATGTCATGTCAATCACCCCTTTTATTTCCCATCAGCCCCTTCAGCGTCTGACATCACTGCCTGTCGTCTTCTGTTCTGCTTTTCATCTTttatcttttctctttttcattttttttttttttacattttggtcaCGTTTGGTTTTGCTCGCCGCTGAGGCGGACAGTCTGCGGGGTTCCTGCTCCTCCGctgggtgggggggagggggagagggggcgCTTCATTTATCACCTGAGGAATCCTGGTTTTATCGCTGAACATTTTTTAGTTTCAGCTTCATTTCATGAGGGCGAAGGTCACAGCgttgattttttctttttctacctACGCTGTAAAACATCTCGGTGTCCGGTCGGTTCTGTCTCTAGAGGATCCTCAAACCGTTTTCGTTAACCCAaatgttgtccttgggtcaaatttgacccgttttcaaagttttttttatatcagaaatatgggacgttgaaataatttgaaaaaagcttcaaaaatgtgGGTGAAAAAACTAAAACGTCAAATAAAGTGCAGAAGAAATCGACAAAGACTTCgagaaaagtgtcaaaaacgtcgtaaaagcttgaaaaaaatgccgggaaaagtgacaaaagtgtcaaaaactaAACGACCAAAGCTTTAGTGACGacgaaaacaaatatttttaattaaaagttgCAGGTGGACAGGAAGCCAACAGGAGTTGTACAGCAGCAGTCGATGTCGTGCACACAGCACCCAAAAGAACGTGTAATCATACGAATTACGGTGCCTAACTTTTCTCTGAAGGGGATCCTAAAACGGTTAATGcccatgttgtcctcgggtcaaatttcacccgttttcaaagtttttttaatatcagaaatatgggctGTTGAAATAAGgagcaaaaatgtcagaaaaagctgaCAAAATGTTGGGAAAAGCGACAAagaagtcagaaaaagtgacaaaaacgttgagaaaAAGCTATAAAAACGCTGAGAAGTGACAACAAACGTTATGTTTTATTTCCGctgttgacgggaagacaacacaaaagtTAAAATAAGGTTCGAGACATATTTCATAAAGGGCCAAACTTCAAAAGAGAATCCCATAATGGGCCagatgtagagtttattgacatgcttttaaaaACATACAGTCAGATATCTTTCCCTGTATTACcacatgttgctttttttggtcttttttcgTTGCTTTCTCGAacgtttttgtaacttttttgtcAACAGTTGTCAGCTTTTTGCAACGTTTTGTTGAAGAAGAAACTTATAACagaaatattcatattttttggGGGAATTAAGATCTGAATTGTTATTAAAGTAAACATCTGAAAATGTATAATTGCAAGAAAACTCTCaataatacatttgaaaatgtatatttCTCAGTAATGAGATTGTTTTCTTGTATCTCATCGCAACTTATTCTCATGAGCGGGTCCGTATGATATCGTTATGCACACTAAAACCTGAGATACCGTAAGAAAGCTAGCCGATGTCACATGACCGGCTGGTCATGTGACatcggctacagagctctgtggcGCCGAGCAGCGGTTGCTAGTTGTTGAAGCCGCTGCAGAGCTTCCTGCCGCCAGCTGCAGAGCTCCGCACGGTGCTCCTTCAGATCAGCGGTAGtcggtggttcagttacccgagaataggtgactctgAGCCGGGCACTGAGCGCCGTGAGCTGCCGGTGGTTTCACGGGGATTACGTTTAAATTTAGCAAAAGAAAAGGTGAGAGTTATCCGGCGACGAAatttaagtttaggaaaaaaagtcttttgttttccccttGAGAGTCCTGTGTTTTAACGCCTAACCATCCATCCTGttgttttcaaaaagtttctatatcaacAATGTGggttctttcaaccaaattgtcaaataaagtaacgtggatggttccctacagcgctcttcacaaataaaataaattatcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150381 lncRNA downstream 3323 2895997 ~ 2896199 (-) True G111632
TU150306 lncRNA downstream 11641 2779482 ~ 2887881 (-) True G111578
TU150313 lncRNA downstream 21131 2849852 ~ 2878391 (-) False G111578
TU150375 lncRNA downstream 52136 2843728 ~ 2847386 (-) True G111626
TU150338 lncRNA downstream 72366 2784518 ~ 2827156 (-) True G111591
TU150504 lncRNA upstream 109000 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 112021 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 116603 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 118513 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 118606 3261060 ~ 3304338 (-) False G111683
XM_039815180.1 mRNA downstream 9783 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 19206 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 35788 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 41899 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 47134 2850025 ~ 2852388 (-) True LOC120568009
XM_039815187.1 mRNA upstream 15748 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 15748 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 15748 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 15748 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA upstream 15748 3158202 ~ 3177928 (-) False LOC120568011
TU150296 other downstream 321508 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 511225 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1056528 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1066427 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 1077972 1820750 ~ 1821550 (-) True LOC120567887
XR_005640646.1 other upstream 61833 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 172192 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 893088 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1095648 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1095648 4238102 ~ 4238670 (-) False G112043

Expression Profile