RNA id: TU150395


Basic Information

Item Value
RNA id TU150395
length 500
lncRNA type sense_over
GC content 0.45
exon number 3
gene id G111638
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 2932369 ~ 3025643 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGTGTTTCAAgatagtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagatctgtgtctatgcacacacacatagactcacatatatatacacacacacacacacagatatacagacacacacacacacagatatacagacacacacacacacacacagatatacagacacacacacacacacacacacacacacacacagatatacagacacacacacagacataaagacactcacacacagacacacatagacatacagacacacacacacagacacatatagacattcagacacacacacagacacatacagacacacacacagacacatacagacacacacacagacataaagacactcacacacagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150383 lncRNA downstream 32146 2898215 ~ 2900223 (-) False LOC120568519
TU150381 lncRNA downstream 36170 2895997 ~ 2896199 (-) True G111632
TU150313 lncRNA downstream 53978 2849852 ~ 2878391 (-) False G111578
TU150375 lncRNA downstream 84983 2843728 ~ 2847386 (-) True G111626
TU150369 lncRNA downstream 130909 2801000 ~ 2801460 (-) True G111620
TU150397 lncRNA upstream 14510 3025024 ~ 3025643 (-) False G111638
TU150444 lncRNA upstream 15529 3026043 ~ 3071500 (-) True G111660
TU150448 lncRNA upstream 37457 3047971 ~ 3050174 (-) True G111663
TU150443 lncRNA upstream 55015 3065529 ~ 3066845 (-) True G111659
TU150442 lncRNA upstream 55377 3065891 ~ 3066845 (-) False G111659
XM_039815180.1 mRNA downstream 42630 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 52053 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 68635 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 74746 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 79981 2850025 ~ 2852388 (-) True LOC120568009
XM_039815187.1 mRNA upstream 147688 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 147688 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 147688 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 147688 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA upstream 147688 3158202 ~ 3177928 (-) False LOC120568011
TU150296 other downstream 354355 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 544072 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1089375 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1099274 1832181 ~ 1833095 (-) True LOC120568499
unassigned_transcript_496 other downstream 1110819 1820750 ~ 1821550 (-) True LOC120567887
XR_005640646.1 other upstream 193773 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 304132 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 1025028 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1227588 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1227588 4238102 ~ 4238670 (-) False G112043

Expression Profile