RNA id: TU150446



Basic Information


Item Value
RNA id TU150446
length 729
lncRNA type sense_over
GC content 0.45
exon number 2
gene id G111662
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3070612 ~ 3145877 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


acacacacacacacacacacacacacacacacacacacagcatgtttTCAGACACTCATCATAAGCATAATGCGGCCAGTCTGGCTCTTACTTACATCACACAACATCACATttactgaaaacattaaataagAGGGGTGGgtttagggatgcaccaaatccagattttgggggttttctgctgaatcctgaaccccctggttgagattgtgctgactcctcctcccatcctcagtccatgaacccagtaaacacatgaatgaagtaaacagggactgtccttcctttgccgtagctgaagttgctgcattctggctgctgtctggagattccttcgtgcacaactcgtattctttcagatgtttcagaccagatgttgtaacagcggccatgttgtgtatagtttagggtcctcgccaccaccagaccaatcagcattgaacagattgaacatgtagctggacttgaatggccttcttttgactgaaagttctgccaaacaacaacttgttctgctcacctGATCCATGTCCTCTTCCTCacattctcaggcggaagaatatagtacttgggcggagtgatatgctcgcagcaagcctgtctgagaatatagttcccagtttgtttactggttagaagatggctgtgtctcatgttacgttgttatttgtacacgctgtgactctacaaatcacaacatgtgaacaggaacatgttggagatattttg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150452 lncRNA downstream 1932 3067842 ~ 3068680 (-) True G111667
TU150443 lncRNA downstream 3767 3065529 ~ 3066845 (-) True G111659
TU150442 lncRNA downstream 3767 3065891 ~ 3066845 (-) False G111659
TU150448 lncRNA downstream 20438 3047971 ~ 3050174 (-) True G111663
TU150397 lncRNA downstream 44969 3025024 ~ 3025643 (-) False G111638
TU150504 lncRNA upstream 105577 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 108598 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 113180 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 115090 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 115183 3261060 ~ 3304338 (-) False G111683
XM_039815180.1 mRNA downstream 180873 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 190296 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 206878 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 212989 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 218224 2850025 ~ 2852388 (-) True LOC120568009
XM_039815187.1 mRNA upstream 12325 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 12325 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 12325 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 12325 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA upstream 12325 3158202 ~ 3177928 (-) False LOC120568011
TU150430 other downstream 78766 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 492598 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 682315 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1227618 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1237517 1832181 ~ 1833095 (-) True LOC120568499
XR_005640646.1 other upstream 58410 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 168769 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 889665 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1092225 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1092225 4238102 ~ 4238670 (-) False G112043

Expression Profile