RNA id: TU150463


Basic Information

Item Value
RNA id TU150463
length 1119
lncRNA type intronic
GC content 0.42
exon number 3
gene id G111678
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3096244 ~ 3100333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgggttagagttagggaaCAATGGCTTGGGTTAGGGGACAATGCCAAGACAGACGAGGACAGATTTGATTTTCATTAAAAGGTTAATACGTTTTCAGGCTTCAAAGGATGGTAAGGAAGGACAAAGGAAAGGAAGTACGTAGGAAAGAATGTagggaagaaaaggaaaagaagaggaGGGAAGGAATAACTGTATAACCATATCGGTTGACACCTATCTGTCCCTTAACACTGACATGGTTTGCCTTCATGTCTGAACTGCTGCCGTTTCTTGGGAACAAAAGAAGTTAAAATGGAGAATATTAAAAATAGATCACACCTTTAAAACATCACGAGAAGAAGAGTGAAAGGTGCTTTTTGTCGTCTGTTTGATATAAAATGCTTCAGGAGGGATTGAACACTGTGTCATCAACATTTTTATCTGCTTCTCTCCATCCAAATGTCTTGCTTATTACACGGAGAGAGAGTTAGTTTTTAGATGTAATCAGctctcttaaagggacaggaGAAATTAAACTGTGTCTGGTAAATATTAGGAACTACCAGGGCTTCACATTCAAAACACAATACACATTTAACACACATgaatacacaacaagacaatcgacaacaaaataagtgtgacaatacataaacacacagagacacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagacagagacacacacacacacacacacacacacacacacacacacacagagacacactcacacacagacacacacacacacacacacacacacacacacacacacacacagacacacacacatacagagagacacacacagacacacacacacacatacacatacagagacacacacacatacagagagacacacacagacacacacacacacatatacacatacagagacacacacacatacagagacacacacacatacagagacacacacacatacagagacagacacacacacccccacacacacgcacacacacatatacacatacagagagacacacacagacacatacacatacagagacacacacacatacacatacagagacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150402 lncRNA downstream 13793 3082253 ~ 3082803 (-) True G111640
TU150453 lncRNA downstream 24404 3071603 ~ 3072192 (-) True G111668
TU150452 lncRNA downstream 27916 3067842 ~ 3068680 (-) True G111667
TU150443 lncRNA downstream 29751 3065529 ~ 3066845 (-) True G111659
TU150442 lncRNA downstream 29751 3065891 ~ 3066845 (-) False G111659
TU150494 lncRNA upstream 17283 3117616 ~ 3118034 (-) True G111690
TU150489 lncRNA upstream 39686 3140019 ~ 3208660 (-) True G111685
TU150504 lncRNA upstream 151121 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 154142 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 158724 3259057 ~ 3304338 (-) False G111683
XM_039815180.1 mRNA downstream 206857 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 216280 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 232862 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 238973 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 244208 2850025 ~ 2852388 (-) True LOC120568009
XM_039815187.1 mRNA upstream 57869 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 57869 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 57869 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 57869 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA upstream 57869 3158202 ~ 3177928 (-) False LOC120568011
TU150430 other downstream 104750 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 518582 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 708299 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1253602 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1263501 1832181 ~ 1833095 (-) True LOC120568499
XR_005640646.1 other upstream 103954 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 214313 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 935209 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1137769 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1137769 4238102 ~ 4238670 (-) False G112043

Expression Profile