RNA id: TU150466


Basic Information

Item Value
RNA id TU150466
length 500
lncRNA type intronic
GC content 0.41
exon number 2
gene id G111680
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3098400 ~ 3099039 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATCTGAAATATGTGGTTGCTAtatttgttgctgttgtatCTCTTCATGTAATCCCATGTTTTTATAACCGCTGATGGGATTAGGCAGAAATTGGAAAATAATCCACAAAATGTCATTTTCTGGTCCTGGCATGAAATAGATTTATTCTTAACTTCTTCTTTTAAGCTGTAGTTTTTGGAGGAAACGTCCTAACAGCTGGTGTCTGGAACGACTAAATGAACTTGGTTATTATCATCGAAGAGGCAAAGAAGAGAACATTTTAGACCGACACAGAATATCAGACAcagaatatcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatagacacacacacacacacacacacacacacatagacacacacacacacacacatagacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150402 lncRNA downstream 15597 3082253 ~ 3082803 (-) True G111640
TU150453 lncRNA downstream 26208 3071603 ~ 3072192 (-) True G111668
TU150452 lncRNA downstream 29720 3067842 ~ 3068680 (-) True G111667
TU150443 lncRNA downstream 31555 3065529 ~ 3066845 (-) True G111659
TU150442 lncRNA downstream 31555 3065891 ~ 3066845 (-) False G111659
TU150494 lncRNA upstream 18577 3117616 ~ 3118034 (-) True G111690
TU150489 lncRNA upstream 40980 3140019 ~ 3208660 (-) True G111685
TU150504 lncRNA upstream 152415 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 155436 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 160018 3259057 ~ 3304338 (-) False G111683
XM_039815180.1 mRNA downstream 208661 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 218084 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 234666 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 240777 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 246012 2850025 ~ 2852388 (-) True LOC120568009
XM_039815187.1 mRNA upstream 59163 3158202 ~ 3181305 (-) False LOC120568011
XM_039815185.1 mRNA upstream 59163 3158202 ~ 3181305 (-) True LOC120568011
XM_039815188.1 mRNA upstream 59163 3158202 ~ 3177928 (-) False LOC120568011
XM_039815186.1 mRNA upstream 59163 3158202 ~ 3177928 (-) False LOC120568011
XM_039815184.1 mRNA upstream 59163 3158202 ~ 3177928 (-) False LOC120568011
TU150430 other downstream 106554 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 520386 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 710103 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1255406 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1265305 1832181 ~ 1833095 (-) True LOC120568499
XR_005640646.1 other upstream 105248 3204287 ~ 3229147 (-) False LOC120568005
TU150514 other upstream 215607 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 936503 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1139063 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1139063 4238102 ~ 4238670 (-) False G112043

Expression Profile