RNA id: TU150489


Basic Information

Item Value
RNA id TU150489
length 2215
lncRNA type read_through
GC content 0.38
exon number 2
gene id G111685
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3140019 ~ 3208660 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcgctgTTTGCACACTGCGCACAGAATTGGAGAGACGCTGTGCTCACATGAACTCTGAGAGAAACTGCAACAAAAGTATCGATCTCATCACGACagtatcgatccgataccaatactCATCTTGGTATCGATACTATCGATATTTAGATCGatacgcccagccctactatgtAGCCGATCTCTGCCTATGTATGCAGTTTTAAtgagtcagagatagcagcactaaggacgagtatggcgagtggtggcGACCCACAAGAGTTAGAGGACCAGTCAGTTACAGTAGTACAGGcaagagagtggtggataagactgCTGTTGTAGATTAGTGGTACTTTTCCAGCGTCGCGGCTCCGAACCGTAACGTTAGTTGGGACAGATGCCTTGTTTctttaggctaactatattaCCTTTAGCCAGGCAGGGAGCAGCTTTACAGTATGTGGTGAAAAATGTCCCGGAGACGTTGTGAGAAAGTTGCATTAATCAGGTAATTTAGCTCGTCTTTGCAGAGAACAGAGATgctgtattttctgttttatagctgattgtcttattttgtttaaaagttACAGATGGAGTCTGGAGAAGATTTGGGGTACTTATTGTTGAcatcttactttacacactctaggctgttgcagctagctcaggggagagactgtatgacactaggtggtacagcctgagacatcAGTGTTTTCCCACACTAACGTGTGGCAGTGCGCCAaactatcaacaccggccgccgcacATTGCATGTcgttatcatttttttttaaacgctatttaaaacacgttattctacatttcctttccctgctctcctccatctctccgtcaattgtgtctcgctcacacacagcgtctgtctctcaatcaaggagagaagacggctggcgaaaattcacaagttcactaaaggttggtatctatgtggtgaacacctttacacaatcacacattcacaatcaccgacccgactcttagcaaacaagcgattgcgcctgctttagaaagttaactagtcgcaagttttcggtaaaatgcagttgggttgtcaaaacactatatgtagcagctgtgaatcaaataaacgtataataaataatgttatggcACAAATCGCTTTtgaatctgtgggaaacactggacatgcacaataaaaaaaaaaattgccttcTGAATTTTTGGTTTTGCTTTTCTCTCCATTGTACCGAACTCGTACGGAACCGTGATGTCTGAACCGAGGTATGAACCGAACCGTGACTTCTgtgtaccgttccacccctGGATTtggcctttttgtttttttatctaaaCGCATACAAGACCTAAACAGATAACCACCAAGACAAAGAGGAGATCCATCCTGACATagataataaagaaaaaacgtGACACAGAGTCTCGATACTGAGATACTTAGACTTAAACTAGAGAACAACTCAATCCTAGATAAAGCCTTTTCATTTGTACAAAAGTATTCCTGCAGAATTATTTGCATGTGCTGTTCACCAAGAAGGGAAACACAAAATAACATGTGTGATGATAAATATTTAATTGTGACCACATTTTGTTTTTGGACCATTACCTTTCTGTCACCATCACCACCAATGTATAAGTCTGCAGCTCTATCTCTGCAAACCCAAACATATGTATTTACATTATTGTTTAATTCAGGTTTTCAAACCGCAATATCAGATtcttgttacatttttaagtttctTTTATCTACTCTTCAATATATTTTCTCTGAGATATGAAAAACATAATTAATGTGAATAATGTTAAAGAATTATTGTATTGATATGTATTCATTAACATGTTATTGTCCTGTCCTCCTGAATcataaagaattttttttttgaaaatacattttaatcagAAATACAAATTTTAGTATAAGGATGTTCACATAAAGGTATGaacacatttcttttctttaaccCTGTTCATATTTTTACACTGGGTTAACAGCTTCCTgctcagtttaacatgtttatcTACTATTAGATTAGATATTAAGTTTATTTTCTTGGAGATTTAAAAACATGAAGACAAGACAAGATTAAATGACTCCTGATACTGATGTGTATTTACTCGCATGTTATTGTCCTGTGGGGTAATACGATGGCTACCACTGAAAGATGGAGCAATTATTCAATAACAACCAATATATAAATGTTATTATGCcccaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150494 lncRNA downstream 21985 3117616 ~ 3118034 (-) True G111690
TU150464 lncRNA downstream 39686 3096244 ~ 3100333 (-) False G111678
TU150463 lncRNA downstream 39686 3096596 ~ 3100333 (-) True G111678
TU150466 lncRNA downstream 40980 3098400 ~ 3099039 (-) True G111680
TU150402 lncRNA downstream 57216 3082253 ~ 3082803 (-) True G111640
TU150504 lncRNA upstream 42794 3251454 ~ 3291846 (-) True G111700
TU150477 lncRNA upstream 45815 3254475 ~ 3304338 (-) False G111683
TU150485 lncRNA upstream 50397 3259057 ~ 3304338 (-) False G111683
TU150484 lncRNA upstream 52307 3260967 ~ 3304338 (-) False G111683
TU150475 lncRNA upstream 52400 3261060 ~ 3304338 (-) False G111683
XM_039815180.1 mRNA downstream 250280 2867255 ~ 2889739 (-) True LOC120568007
XM_039815181.1 mRNA downstream 259703 2878147 ~ 2880316 (-) True LOC120568008
XM_039815183.1 mRNA downstream 276285 2859574 ~ 2863734 (-) True LOC120568010
XM_039815190.1 mRNA downstream 282396 2854923 ~ 2857623 (-) True LOC120568013
XM_039815182.1 mRNA downstream 287631 2850025 ~ 2852388 (-) True LOC120568009
XM_039815173.1 mRNA upstream 3888 3212548 ~ 3229147 (-) False LOC120568005
XM_039815174.1 mRNA upstream 3888 3212548 ~ 3229147 (-) True LOC120568005
XM_039815178.1 mRNA upstream 25708 3234368 ~ 3254369 (-) True LOC120568006
XM_039815177.1 mRNA upstream 34215 3242875 ~ 3254369 (-) False LOC120568006
XM_039815176.1 mRNA upstream 34215 3242875 ~ 3254369 (-) False LOC120568006
TU150430 other downstream 148173 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 562005 2573304 ~ 2578014 (-) True G111573
TU150255 other downstream 751722 2341496 ~ 2388297 (-) True LOC120567903
unassigned_transcript_498 other downstream 1297025 1842454 ~ 1842994 (-) True LOC120567886
unassigned_transcript_497 other downstream 1306924 1832181 ~ 1833095 (-) True LOC120568499
TU150514 other upstream 105986 3314646 ~ 3369939 (-) True LOC120568520
TU150904 other upstream 826882 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 1029442 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 1029442 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 1029442 4238102 ~ 4238670 (-) False G112043

Expression Profile