RNA id: XM_039816974.1


Basic Information

Item Value
RNA id XM_039816974.1
length 1918
RNA type mRNA
GC content 0.57
exon number 4
gene id LOC120569104
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3445400 ~ 3456534 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAAATGTCTCGAGAGCAGCGGTTTGTCATGATTCGTGCTGAGACAACAACACTGTGTACCGGTTGAGCATTAGCTACATATTGTAGTTTTGTAGTTCACTGTTATTGAGAGAGcgaacgagagagagacagagagagaaagagagaaagaaagaaagaaagaggataTATTCGTAAAACACTGGTTGCGTTGGATGAAACGCACTGTGAGGATTTAACCGTTATTTCGCGGAATATTTGGATTTTACTTAGTTTACAAGTTTTCTCTGGGAGtcacaacgGCAGCCATAATGCCGCCGGTGTTACCCGCGTCCTGCGGTAACTATGACTACGACTATGACACGGTGCAGCCCTACTTCTTCGTGGATGGCGAGGAGGAGGACTTCTACCTGCCCCCCCGCAGCCAGCTCCTCCCGGGCCCCGGCGAGGACATCTGGAAGAAGTTTGAGCTCCTGCCGACCCCCCCTCTGTCGCCGAGCCGGAGACCGTCCCTCTCGGACGCCACGCTGTCCGCCGCGGAGCACCTGGAGGCGGTGTCGGAGCTGCTGGGTGAGCGCTGCGGGCCCTCGGCCGCCTTCCTCCAGTCCTTCATCATCCAGGACTGCATGTGGAGCAGCAGCTTCGCCGCCGCCACCAAGCTGGAGAAGGCCGTGTCCGAGAGGCTGGCGTCGCTACGAGCACGCCAGAACTCCTCCGGGACCGACAGCGCTAACGGCGCCGCGGACGGAGAGGCTGATCAGCAGGTGAGCAGCTCTCGGGTGAACCCGGGGTACCTGCAGGACCTCCACACGGCGCCGACGGACTGCATCGACCCCTCGGTGGTGTTCCCGTTCACCAGCCTGCGAGAGAAGAGCGGCCGAGGAGCAGCGACGGAGGTAGAGTCAGAGCTGTGTCTGGACTCGCCGCCTCTCACCAGCAGCGACAGCGAATCAGaagaagaagaagaagaagcagaagaaaaAGACAGCGAGGAAGACGAGATCGACGTGGTGACGGTTGACCGGCGGCGGAGGGCGTCGCGGCGCTCCCACGCCGGCCGCGTCCCGGACACCTCGGCGCCGCTGGTCCTGAAGCGCTGTCACGTCAACTTCCACCAGCACAACTACGCCGCCCAGCAGCCCTCGCCAGCGCCAGCTCTCCGACCGGCTCCCGGCAAACGGATGAAGTCGGAGAGCAGCGGCGGCGGCTCTAGCCCGTCTCCGAGTCCTCGCTCGGACAGCGGCTCGGACGACGGCGCCAAACGCAGGACTCACAACGTGCTGGAGAGGCAGCGCCGCAACGAGCTGAAGATGAGCTTCGTGGCCCTGAGGGACGAGGTCCCCGCGGTGGCCGGCAACGACAAGGCCGCCAAAGTGGCGATCCTGAAAACGGCGACCGAGTTCATCTTCGAGATCCGAGAGGACGAGAGGAGGCTGGTCGCCGCGAAGGACGCgctgaggaagaggagcagagagCTCAGACACAGACTGAAGCAACTGAGGAAGTCACATTAACACTTAACgctggtttatttttatttttttacgtttttgtcacGTTTTTTTCATGTCGGGGACTGACTAATTGTGTTAATCATTTCACCGAAGTGCTGACTCGTGTAAGATGAACTACAAGAACCATAACTCACTGACCGCCCCCCCTGAGTCGGTTGTGGTCGACTAATCGGCCGTTTTTCTTTcagttagggatgcaccgaatctacatttttttcaaggtttgGCTGAAAACCGAATCCACCAGGGCtgtgtgctcgattgaagaacttCTCAGTCGACTAACGTTCGTTCAATCacatcgactaatcgattagttgatttaatcgacagatctgtaaatctgagtttctccgcaaaagcaccactttaattcttgtgtttaccagagatgagctcgtacgtttcttggaaataagtcattc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150553 lncRNA downstream 9598 3437912 ~ 3439115 (-) True G111740
TU150526 lncRNA downstream 49530 3398238 ~ 3399183 (-) True G111716
TU150524 lncRNA downstream 50748 3388130 ~ 3397965 (-) True G111714
TU150521 lncRNA downstream 71657 3376814 ~ 3377056 (-) True G111713
TU150520 lncRNA downstream 72998 3375271 ~ 3375715 (-) True G111712
TU150558 lncRNA upstream 30322 3486856 ~ 3487202 (-) True G111745
TU150563 lncRNA upstream 37494 3494028 ~ 3494269 (-) True G111750
TU150882 lncRNA upstream 39059 3495593 ~ 3596036 (-) False G111935
TU150883 lncRNA upstream 39059 3495593 ~ 3618428 (-) False G111935
TU150885 lncRNA upstream 39059 3495593 ~ 3521546 (-) False G111935
XM_039816093.1 mRNA downstream 76938 3349075 ~ 3371775 (-) False LOC120568520
XM_039815178.1 mRNA downstream 194344 3234368 ~ 3254369 (-) True LOC120568006
XM_039815177.1 mRNA downstream 194344 3242875 ~ 3254369 (-) False LOC120568006
XM_039815176.1 mRNA downstream 194344 3242875 ~ 3254369 (-) False LOC120568006
XM_039815174.1 mRNA downstream 219566 3212548 ~ 3229147 (-) True LOC120568005
XM_039816095.1 mRNA upstream 108012 3564546 ~ 3576221 (-) True LOC120568522
XM_039815751.1 mRNA upstream 173138 3629672 ~ 3633397 (-) True LOC120568325
XM_039815749.1 mRNA upstream 215016 3671550 ~ 3706170 (-) True LOC120568323
XM_039816097.1 mRNA upstream 290763 3747297 ~ 3751140 (-) True LOC120568526
XM_039815747.1 mRNA upstream 292923 3749457 ~ 3760667 (-) False LOC120568321
TU150514 other downstream 78774 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 219566 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 306843 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 456867 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 870699 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 579008 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 781568 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 781568 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 781568 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 781568 4238102 ~ 4238670 (-) False G112043

Expression Profile