RNA id: TU150553


Basic Information

Item Value
RNA id TU150553
length 1204
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G111740
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3437912 ~ 3439115 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acagattaaaataaaatgctatGTTTATGTTGTAAAATAGTGCACTTACAGGGTATCGCGGTGAGACTTTTGCTTAAACAAAGGATTGCAACTGCTGCTTGACACAAATCAGCAGCTAACCATGAACAGTTTATTACAGTTTGGATCTTATTATGGGAACTTTATCTATAACTTCTGTTTGTTGTGATGCTGTTTAACTCATGGGTTAGGATGGGTTCAAGGTAGGTTCACGCAGATAATACTCATGTTGTCGTCCCCGTCAACCATGATGCaacttttgggttttttttctgagtcaaaatgtaaaaaaagattcCAACGTttttttggtcgtctttttcgacacttttgtcacttttttcaaagtttctgtcAATACTTATCTGcgcatttttgacatttttgaacattttcccaacattttgtcacttttttccaatttttttgtcattctttctgatgtttttgtcacttctttctgcttttttgacatttctttcctacatttttcaacattctattataaatttttctttacatgctataaaattgactaaagcacccaaatttaatgaaagtagtgaactgatcatgtatataacttgtgaagagcgttgtatggaaccatccacgttatttggttttaaaatttggttgaaagaaacccacatttctgatatatttgaaaatgggtcaaatttgacccagagGAGGTTAAAGGTCCAAATACACATTCAAAATTGGAGGTACGAGACCAAACATTTCTGTACTTACAGTACACTTTTTAATATGTTCTCTTAAgagcacataattgttgttttaAGAAGCCAGAACTGTAGCTTTTGACTTATTTAAAGGGTACAAAATGGAACTGAAGGGTACACGATTGTCTGTCAAAAGGGAACCTCTCCTGCGACAAGCATTTATACACTTTTAGGTACTTAACAGTACATCTAGTTTTGGGTGCGTACACAGTCTAACTgtgattaacccttgtgttgtcttccccgtTGACCAtgatgcaactttttgttttgttttttctgggtcaaaatgtaaaaaaaattccaacATCTTGGTTGGAATCTTGAAGTTTCTGTCAAAATTTGTCTGcacttttttgacgtttttttcaagattttcctgacatttttgtcactttttccgatgtttttcaacgttctttataattttttctttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150526 lncRNA downstream 38729 3398238 ~ 3399183 (-) True G111716
TU150524 lncRNA downstream 39947 3388130 ~ 3397965 (-) True G111714
TU150521 lncRNA downstream 60856 3376814 ~ 3377056 (-) True G111713
TU150520 lncRNA downstream 62197 3375271 ~ 3375715 (-) True G111712
TU150510 lncRNA downstream 123942 3313689 ~ 3313970 (-) True G111706
TU150549 lncRNA upstream 6285 3445400 ~ 3449397 (-) True LOC120569104
TU150558 lncRNA upstream 47741 3486856 ~ 3487202 (-) True G111745
TU150563 lncRNA upstream 54913 3494028 ~ 3494269 (-) True G111750
TU150882 lncRNA upstream 56478 3495593 ~ 3596036 (-) False G111935
TU150883 lncRNA upstream 56478 3495593 ~ 3618428 (-) False G111935
XM_039816093.1 mRNA downstream 66137 3349075 ~ 3371775 (-) False LOC120568520
XM_039815178.1 mRNA downstream 183543 3234368 ~ 3254369 (-) True LOC120568006
XM_039815177.1 mRNA downstream 183543 3242875 ~ 3254369 (-) False LOC120568006
XM_039815176.1 mRNA downstream 183543 3242875 ~ 3254369 (-) False LOC120568006
XM_039815174.1 mRNA downstream 208765 3212548 ~ 3229147 (-) True LOC120568005
XM_039816976.1 mRNA upstream 9598 3448713 ~ 3456534 (-) False LOC120569104
XM_039816975.1 mRNA upstream 9598 3448713 ~ 3456534 (-) False LOC120569104
XM_039816974.1 mRNA upstream 9598 3448713 ~ 3456534 (-) False LOC120569104
XM_039816973.1 mRNA upstream 9598 3448713 ~ 3456534 (-) False LOC120569104
XM_039816972.1 mRNA upstream 9598 3448713 ~ 3456534 (-) False LOC120569104
TU150514 other downstream 67973 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 208765 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 296042 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 446066 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 859898 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 596427 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 798987 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 798987 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 798987 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 798987 4238102 ~ 4238670 (-) False G112043

Expression Profile