RNA id: XM_039815755.1



Basic Information


Item Value
RNA id XM_039815755.1
length 1117
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC120568331
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3491589 ~ 3506128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


TTATCTGTCTGCTGCAGGGGCTGATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGATGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTCAGCAGTGTGACAATACTTATGATTATGTATACTGGTACcagaagagagacacagaaacattcaCAAGGATTCTTCGTATTGATCCGAGTGATGGTGGCATACATAAGGGATACAATCATTCTCAGGAAGATGATTTCTCAGCTGTGAATAAAAGAAATGGCTGGGAGTTGCAGATCCAAAGCATTAAACCCGATCATTCAGCCACCTACTACTGCTCCTGTTGGAAGGATGCTCCccacaTCGGATACTACTACATCTTTGGCTCTGGAACTAAACTGATTGTAACAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCTATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGTAATGAGACTGGTCCTCTGGAGGAGCTGCCCTCTGATGATATAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATCCATCAGAAAGAGAACAGCACATATAAATACCGCTGTGACGTCCTACATGAGGGGGGGACAGTGGAGGCCCAAACAGAACAAGaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTtgtcctTCCAGTCCCAGTGCAGGGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCTCACATGCTGACTGACTGTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150557 lncRNA upstream 4382 3486855 ~ 3487207 (+) True G111744
TU150547 lncRNA upstream 35036 3455649 ~ 3456553 (+) True G111735
TU150545 lncRNA upstream 37820 3452971 ~ 3453769 (+) True G111733
TU150544 lncRNA upstream 38690 3452171 ~ 3452899 (+) True G111732
TU150529 lncRNA upstream 41547 3445400 ~ 3450042 (+) True G111717
TU150592 lncRNA downstream 135 3506263 ~ 3552735 (+) True G111752
TU150614 lncRNA downstream 13014 3519142 ~ 3594107 (+) True G111765
TU150610 lncRNA downstream 16729 3522857 ~ 3549797 (+) True G111761
TU150571 lncRNA downstream 45038 3551166 ~ 3552023 (+) False LOC120568521
TU150618 lncRNA downstream 61844 3567972 ~ 3633295 (+) True G111768
XM_039814780.1 mRNA upstream 93483 3388054 ~ 3398106 (+) True LOC120567769
XM_039815924.1 mRNA upstream 187363 3298864 ~ 3304226 (+) True ptmab
XM_039816303.1 mRNA upstream 664735 2787779 ~ 2826854 (+) True rasal2
XM_039816548.1 mRNA upstream 740017 2749854 ~ 2751572 (+) True LOC120568825
XM_039816549.1 mRNA upstream 757691 2732606 ~ 2733898 (+) True LOC120568826
XM_039815754.1 mRNA downstream 5501 3511629 ~ 3525115 (+) False LOC120568327
XM_039816094.1 mRNA downstream 34859 3540987 ~ 3552017 (+) True LOC120568521
XM_039816096.1 mRNA downstream 90287 3596415 ~ 3600572 (+) True LOC120568524
XM_039815753.1 mRNA downstream 209438 3715566 ~ 3715955 (+) True LOC120568326
XM_039816100.1 mRNA downstream 297770 3803898 ~ 3807690 (+) True LOC120568529
TU150236 other upstream 92406 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 415688 3016958 ~ 3075901 (+) True G111494
TU150153 other upstream 470331 3020593 ~ 3021258 (+) True G111484
TU150157 other upstream 550741 2938149 ~ 2940848 (+) True G111486
TU150110 other upstream 667001 2816944 ~ 2824588 (+) True G111452
TU150598 other downstream 5525 3511653 ~ 3525049 (+) True LOC120568327
TU150715 other downstream 582516 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 584380 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 759374 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 992866 4498994 ~ 4539205 (+) False dnaaf11

Expression Profile