RNA id: TU150562


Basic Information

Item Value
RNA id TU150562
length 222
lncRNA type intronic
GC content 0.40
exon number 1
gene id G111749
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3492873 ~ 3493094 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGGAATAAAGTCTGTTCCTCCTCACAATGCTGATCTGCTCTTAATGTAAACACTTCCTGTGTCTCCTTCACAATAAAGGCTTTGCAGACACATTTCTAACATCACATGTTGGAACTGATTTCAGCAGATAATCTCACTTTAGTCTTTTCATCCAACCAGAACTTTGATCCAGAACCAGAGACCAGACATGATGTTTATGGTCCCCAGATGATAAATCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150561 lncRNA upstream 507 3492163 ~ 3492366 (+) False LOC120568331
TU150557 lncRNA upstream 5666 3486855 ~ 3487207 (+) True G111744
TU150547 lncRNA upstream 36320 3455649 ~ 3456553 (+) True G111735
TU150545 lncRNA upstream 39104 3452971 ~ 3453769 (+) True G111733
TU150544 lncRNA upstream 39974 3452171 ~ 3452899 (+) True G111732
TU150592 lncRNA downstream 13169 3506263 ~ 3552735 (+) True G111752
TU150614 lncRNA downstream 26048 3519142 ~ 3594107 (+) True G111765
TU150610 lncRNA downstream 29763 3522857 ~ 3549797 (+) True G111761
TU150571 lncRNA downstream 58072 3551166 ~ 3552023 (+) False LOC120568521
TU150618 lncRNA downstream 74878 3567972 ~ 3633295 (+) True G111768
XM_039814780.1 mRNA upstream 94767 3388054 ~ 3398106 (+) True LOC120567769
XM_039815924.1 mRNA upstream 188647 3298864 ~ 3304226 (+) True ptmab
XM_039816303.1 mRNA upstream 666019 2787779 ~ 2826854 (+) True rasal2
XM_039816548.1 mRNA upstream 741301 2749854 ~ 2751572 (+) True LOC120568825
XM_039816549.1 mRNA upstream 758975 2732606 ~ 2733898 (+) True LOC120568826
XM_039815754.1 mRNA downstream 18535 3511629 ~ 3525115 (+) False LOC120568327
XM_039816094.1 mRNA downstream 47893 3540987 ~ 3552017 (+) True LOC120568521
XM_039816096.1 mRNA downstream 103321 3596415 ~ 3600572 (+) True LOC120568524
XM_039815753.1 mRNA downstream 222472 3715566 ~ 3715955 (+) True LOC120568326
XM_039816100.1 mRNA downstream 310804 3803898 ~ 3807690 (+) True LOC120568529
TU150236 other upstream 93690 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 416972 3016958 ~ 3075901 (+) True G111494
TU150153 other upstream 471615 3020593 ~ 3021258 (+) True G111484
TU150157 other upstream 552025 2938149 ~ 2940848 (+) True G111486
TU150110 other upstream 668285 2816944 ~ 2824588 (+) True G111452
TU150599 other downstream 7585 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other downstream 18559 3511653 ~ 3525049 (+) True LOC120568327
TU150715 other downstream 595550 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 597414 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 772408 4265502 ~ 4326186 (+) True tmeff1a

Expression Profile