RNA id: TU150571


Basic Information

Item Value
RNA id TU150571
length 510
lncRNA type sense_over
GC content 0.46
exon number 2
gene id LOC120568521
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3540987 ~ 3852034 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caCACAGAGCTGACAGTGATGAAGGCTTGGTGACTGTGTTCAGCAGTGATTCAGCTTCATGTGGAGATGCTGtcaaagagagcagaggagtAGATGACTGACATTTGTCACTGCAACTCCAAACATTTCActgcttttctgtttcagaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTtgTCCTTCCAGTCCCAGTGCAGGGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCTCACATGCTGACTGACTGTTTTCTGCTCGACTTTTCTCGCCTTCAAATCTCATCAATTCATctcatttatcactttgatCACTATTCACATATATCAATTATGACTTGTTGTAGTTGTCATCTTAATAATATAAATACCAGCCCGTTCTCATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150610 lncRNA upstream 1369 3522857 ~ 3549797 (+) True G111761
TU150562 lncRNA upstream 58072 3492873 ~ 3493094 (+) True G111749
TU150561 lncRNA upstream 58800 3492163 ~ 3492366 (+) False LOC120568331
TU150557 lncRNA upstream 63959 3486855 ~ 3487207 (+) True G111744
TU150547 lncRNA upstream 94613 3455649 ~ 3456553 (+) True G111735
TU150618 lncRNA downstream 15949 3567972 ~ 3633295 (+) True G111768
TU150620 lncRNA downstream 16710 3568733 ~ 3575838 (+) False LOC120568340
XR_005640707.1 lncRNA downstream 16816 3568839 ~ 3571923 (+) False LOC120568340
XR_005640705.1 lncRNA downstream 17799 3569822 ~ 3571901 (+) True LOC120568340
XR_005640706.1 lncRNA downstream 17799 3569822 ~ 3571901 (+) False LOC120568340
XM_039815754.1 mRNA upstream 26051 3511629 ~ 3525115 (+) False LOC120568327
XM_039815755.1 mRNA upstream 45038 3491589 ~ 3506128 (+) True LOC120568331
XM_039814780.1 mRNA upstream 153060 3388054 ~ 3398106 (+) True LOC120567769
XM_039815924.1 mRNA upstream 246940 3298864 ~ 3304226 (+) True ptmab
XM_039816303.1 mRNA upstream 724312 2787779 ~ 2826854 (+) True rasal2
XM_039816096.1 mRNA downstream 44392 3596415 ~ 3600572 (+) True LOC120568524
XM_039815753.1 mRNA downstream 163543 3715566 ~ 3715955 (+) True LOC120568326
XM_039816100.1 mRNA downstream 251875 3803898 ~ 3807690 (+) True LOC120568529
XM_039815756.1 mRNA downstream 263797 3815820 ~ 3825434 (+) True LOC120568332
XM_039816709.1 mRNA downstream 384608 3936631 ~ 3949566 (+) True vcpip1
TU150599 other upstream 26117 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 26117 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 151983 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 475265 3016958 ~ 3075901 (+) True G111494
TU150153 other upstream 529908 3020593 ~ 3021258 (+) True G111484
TU150715 other downstream 536621 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 538485 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 713479 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 946971 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 975892 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile