RNA id: TU150592


Basic Information

Item Value
RNA id TU150592
length 713
lncRNA type read_through
GC content 0.35
exon number 2
gene id G111752
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3506263 ~ 3552735 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaactcgtaaaataaggacgtttggacagtggcttgTCAGCGCGTCTGATGCGCGAAAAGGAGCACTTCACGTGTTTGTATAACGCAGCAGGGAGAGCCGCAGTTAGATACGatttagcgagtagtatgtaagggaGAATTACTGCGTGTCATGCTTGCTAGAGTTGCTTTTTAGAgtcgcttttttctttcctcctgcgtgtcacggaaccgtaCAACCTTttaatagtcccgaccaagcgcgtttactTGAAACGCTAAAGGAGAattttagcgtcaataagaacgagaaaggctcctgaccaaacgtccttattttatttattttacgaGTTTGGTGTGAGAATCTGttgtaaatacatatatatcttAGCAGTTACTAAGTTTAAAAGTTAAGTTTAAATTCTGTGATGTTTTTAGATACTTTagtttatttctacttttaattGTGACTTCTATAATGATAAATCATATAAATAATCAGCTGTCTGGTAGATATTTCATAGTTCATAGTATTTTTTCTGTCCTTGTGTTTCTCTTTAATACATTATGTAGAGTGTGGCAGCGTTGTCAAatttttttcatgaataaaagttttttttcatcctTGTTTTTTGGATTTCATTCAAAtaattagaatcagaatcattGTCATTGGACAGCTAACCAAAGATAACAAATATATGTAACCAGTTGTTGTATACAGATCAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150562 lncRNA upstream 13169 3492873 ~ 3493094 (+) True G111749
TU150561 lncRNA upstream 13897 3492163 ~ 3492366 (+) False LOC120568331
TU150557 lncRNA upstream 19056 3486855 ~ 3487207 (+) True G111744
TU150547 lncRNA upstream 49710 3455649 ~ 3456553 (+) True G111735
TU150545 lncRNA upstream 52494 3452971 ~ 3453769 (+) True G111733
TU150618 lncRNA downstream 15237 3567972 ~ 3633295 (+) True G111768
TU150620 lncRNA downstream 15998 3568733 ~ 3575838 (+) False LOC120568340
XR_005640707.1 lncRNA downstream 16104 3568839 ~ 3571923 (+) False LOC120568340
XR_005640705.1 lncRNA downstream 17087 3569822 ~ 3571901 (+) True LOC120568340
XR_005640706.1 lncRNA downstream 17087 3569822 ~ 3571901 (+) False LOC120568340
XM_039815755.1 mRNA upstream 135 3491589 ~ 3506128 (+) True LOC120568331
XM_039814780.1 mRNA upstream 108157 3388054 ~ 3398106 (+) True LOC120567769
XM_039815924.1 mRNA upstream 202037 3298864 ~ 3304226 (+) True ptmab
XM_039816303.1 mRNA upstream 679409 2787779 ~ 2826854 (+) True rasal2
XM_039816548.1 mRNA upstream 754691 2749854 ~ 2751572 (+) True LOC120568825
XM_039816096.1 mRNA downstream 43680 3596415 ~ 3600572 (+) True LOC120568524
XM_039815753.1 mRNA downstream 162831 3715566 ~ 3715955 (+) True LOC120568326
XM_039816100.1 mRNA downstream 251163 3803898 ~ 3807690 (+) True LOC120568529
XM_039815756.1 mRNA downstream 263085 3815820 ~ 3825434 (+) True LOC120568332
XM_039816709.1 mRNA downstream 383896 3936631 ~ 3949566 (+) True vcpip1
TU150236 other upstream 107080 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 430362 3016958 ~ 3075901 (+) True G111494
TU150153 other upstream 485005 3020593 ~ 3021258 (+) True G111484
TU150157 other upstream 565415 2938149 ~ 2940848 (+) True G111486
TU150110 other upstream 681675 2816944 ~ 2824588 (+) True G111452
TU150715 other downstream 535909 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 537773 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 712767 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 946259 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 975180 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile