RNA id: XM_039815754.1


Basic Information

Item Value
RNA id XM_039815754.1
length 1099
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC120568327
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3500679 ~ 3525115 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCCTTATCTGTCTGCTGCAGGGGCTGATGGGAGATGTGAGGAGCTGTTAGAAACCACGTGGCCCTCGTCTGATCTCACAGCTCGTCCTTGTTTGGCCTCAGCTGCATCAGAGCGCCACTTCTCCCCAGGTTCACCAGAGGAAACACCACTGAACTAAATGCTTttcctcccagctgctgctctgtgctgtctgtgttcAGCGCTGGCTGCCATGGCAACACAGCTGATTCAGGAGGATTTAACATTGACCAGGAGAGTTGGTGGAGACGTCTCCTTCAGCTGTCGAGGCACTGAGCAGTGTGACAATACTTATGATTATGTATACTGGTACCagaagagagacaaagaaacatTCACAAGGATTCTGTATATTAGGAGGAATACTGGTGTCATAGAGAAGGAGAGATACAATCATCCTCAGAAAGATGATTTCTCAGCTGTGAATGATCAGAACGTCTGTGAGTTGCAGATCCAGAAGGTTAAACCCGATCATTCAGCCACCTACTACTGCTCCTGTGAGAAGGCAGGTAAACGGTACTTGATCTTTGGCTCTGGAACTAAACTGTTTGTATCAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGAAAGGAGAATGGTCCTCTGGAGGAGCTGTCCTCTACTGAGGGAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATTAATCAGCAAAAGAACAGCAAATATAAATACCGCTGTGACGTCCTACATGAGGGGGGGACAGTGGTGGCCCAAACAGAACAAGAGGTTTCTACTCTTCCACCACTGTCTCAGTACCAAGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAGCTGCACACATGCTGACTGACTGTTTTCTGTGTGCTGCAGCTTTGTCAATTTTTCAGTATAACATTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150562 lncRNA upstream 18535 3492873 ~ 3493094 (+) True G111749
TU150561 lncRNA upstream 19263 3492163 ~ 3492366 (+) False LOC120568331
TU150557 lncRNA upstream 24422 3486855 ~ 3487207 (+) True G111744
TU150547 lncRNA upstream 55076 3455649 ~ 3456553 (+) True G111735
TU150545 lncRNA upstream 57860 3452971 ~ 3453769 (+) True G111733
TU150571 lncRNA downstream 26051 3551166 ~ 3552023 (+) False LOC120568521
TU150618 lncRNA downstream 42857 3567972 ~ 3633295 (+) True G111768
TU150620 lncRNA downstream 43618 3568733 ~ 3575838 (+) False LOC120568340
XR_005640707.1 lncRNA downstream 43724 3568839 ~ 3571923 (+) False LOC120568340
XR_005640705.1 lncRNA downstream 44707 3569822 ~ 3571901 (+) True LOC120568340
XM_039815755.1 mRNA upstream 5501 3491589 ~ 3506128 (+) True LOC120568331
XM_039814780.1 mRNA upstream 113523 3388054 ~ 3398106 (+) True LOC120567769
XM_039815924.1 mRNA upstream 207403 3298864 ~ 3304226 (+) True ptmab
XM_039816303.1 mRNA upstream 684775 2787779 ~ 2826854 (+) True rasal2
XM_039816548.1 mRNA upstream 760057 2749854 ~ 2751572 (+) True LOC120568825
XM_039816094.1 mRNA downstream 15872 3540987 ~ 3552017 (+) True LOC120568521
XM_039816096.1 mRNA downstream 71300 3596415 ~ 3600572 (+) True LOC120568524
XM_039815753.1 mRNA downstream 190451 3715566 ~ 3715955 (+) True LOC120568326
XM_039816100.1 mRNA downstream 278783 3803898 ~ 3807690 (+) True LOC120568529
XM_039815756.1 mRNA downstream 290705 3815820 ~ 3825434 (+) True LOC120568332
TU150236 other upstream 112446 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 435728 3016958 ~ 3075901 (+) True G111494
TU150153 other upstream 490371 3020593 ~ 3021258 (+) True G111484
TU150157 other upstream 570781 2938149 ~ 2940848 (+) True G111486
TU150110 other upstream 687041 2816944 ~ 2824588 (+) True G111452
TU150715 other downstream 563529 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 565393 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 740387 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 973879 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 1002800 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile