RNA id: TU150692


Basic Information

Item Value
RNA id TU150692
length 424
lncRNA type inter_gene
GC content 0.52
exon number 5
gene id G111832
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4002014 ~ 4010693 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCGGTTTCCTCGATGGCCACAGATTTGACGTAGCTGTCGTTGGAGTACAATACCACATTGGCGATCTGATCCACAGAGACAATGATGTTCTTGATGTTTTTGCTGGAGTTGTTTGTGACGCTGACGTTCACTTTGATGACCTCACCGTGGTAGTAAATCTCTTTGTCCAGACTGGCCTTGAGGTGCAGCTGTTTATCTGACATGACAAAGTCCTTGGGGGTATCAACAGAGGGCTGCACTCCCTCGCTGTCTGGAGCGTATTGGACCTTCCTGAGCAACAGCTTCACTGTGCTCCGTTTGCGTACCTTAGCGTCCTGGCTCTCAGCACTGAACGCTTTGATCTCAAACTCCACGGCACATTGCTTGCCGACATCATTGGGCCCTGGCTGGAGAGCCACTGAGCAAGGCAGGTTGTCAGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150690 lncRNA upstream 2081 4002014 ~ 4005335 (+) False G111832
TU150691 lncRNA upstream 3683 4002014 ~ 4003733 (+) True G111832
TU150674 lncRNA upstream 50142 3950944 ~ 3957274 (+) True G111819
TU150565 lncRNA upstream 155382 3850107 ~ 3852034 (+) False LOC120568521
TU150579 lncRNA upstream 156541 3850107 ~ 3850875 (+) False LOC120568521
TU150705 lncRNA downstream 74409 4085102 ~ 4087986 (+) True G111844
TU150719 lncRNA downstream 80334 4091027 ~ 4139026 (+) True G111851
TU150708 lncRNA downstream 80721 4091414 ~ 4139495 (+) True G111847
TU150720 lncRNA downstream 82146 4092839 ~ 4140904 (+) True G111852
TU150721 lncRNA downstream 82658 4093351 ~ 4141678 (+) True G111853
XM_039816103.1 mRNA upstream 9557 3995617 ~ 3997859 (+) True LOC120568532
XM_039816102.1 mRNA upstream 14827 3986445 ~ 3992589 (+) True LOC120568531
XM_039816475.1 mRNA upstream 43363 3959592 ~ 3964053 (+) True dusp28
XM_039816474.1 mRNA upstream 43363 3959593 ~ 3964053 (+) False dusp28
XM_039816709.1 mRNA upstream 57850 3936631 ~ 3949566 (+) True vcpip1
XM_039816306.1 mRNA downstream 40627 4051320 ~ 4065021 (+) True crfb16
XM_039816105.1 mRNA downstream 201431 4212124 ~ 4323581 (+) False tmeff1a
XM_039815669.1 mRNA downstream 326392 4337085 ~ 4349158 (+) True cavin4a
XM_039815668.1 mRNA downstream 366472 4377165 ~ 4393309 (+) True ift57
XM_039815666.1 mRNA downstream 405928 4416621 ~ 4418585 (+) True LOC120568271
TU150599 other upstream 482367 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 482367 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 608233 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 931515 3016958 ~ 3075901 (+) True G111494
TU150715 other downstream 77951 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 79815 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 254809 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 488301 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 517222 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile