RNA id: TU150705


Basic Information

Item Value
RNA id TU150705
length 288
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G111844
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4085102 ~ 4087986 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAAACTACAGCTGTGCCTCAGAGGATCACACACATCTTCACTGAGAAAAGCATATGTTGGTCCAGAATTGAAGTCAGTTTAGCAGAAGCTGACGGGAGGTGCGTATTTTATGTCTGTTCTTCTCCTAATTTATTTAACTGTCAAGACTATTTAGTTTGTTGCTTTCCATTTTGTCATTGCATGATGGAAAATGAATTCACCACAGATGGCACAATCAGCTCAGTTCTATTCCATCCAATCTGATGTGAACACTGATGattagtaaaataaataataatgaacaCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150676 lncRNA upstream 66706 3954028 ~ 4018396 (+) True G111821
TU150692 lncRNA upstream 74409 4007416 ~ 4010693 (+) False G111832
TU150690 lncRNA upstream 79767 4002014 ~ 4005335 (+) False G111832
TU150691 lncRNA upstream 81369 4002014 ~ 4003733 (+) True G111832
TU150674 lncRNA upstream 127828 3950944 ~ 3957274 (+) True G111819
TU150719 lncRNA downstream 3041 4091027 ~ 4139026 (+) True G111851
TU150708 lncRNA downstream 3428 4091414 ~ 4139495 (+) True G111847
TU150720 lncRNA downstream 4853 4092839 ~ 4140904 (+) True G111852
TU150721 lncRNA downstream 5365 4093351 ~ 4141678 (+) True G111853
TU150724 lncRNA downstream 10364 4098350 ~ 4147962 (+) True G111856
XM_039816306.1 mRNA upstream 20081 4051320 ~ 4065021 (+) True crfb16
XM_039816103.1 mRNA upstream 87243 3995617 ~ 3997859 (+) True LOC120568532
XM_039816102.1 mRNA upstream 92513 3986445 ~ 3992589 (+) True LOC120568531
XM_039816475.1 mRNA upstream 121049 3959592 ~ 3964053 (+) True dusp28
XM_039816474.1 mRNA upstream 121049 3959593 ~ 3964053 (+) False dusp28
XM_039816105.1 mRNA downstream 124138 4212124 ~ 4323581 (+) False tmeff1a
XM_039815669.1 mRNA downstream 249099 4337085 ~ 4349158 (+) True cavin4a
XM_039815668.1 mRNA downstream 289179 4377165 ~ 4393309 (+) True ift57
XM_039815666.1 mRNA downstream 328635 4416621 ~ 4418585 (+) True LOC120568271
XM_039814903.1 mRNA downstream 370898 4458884 ~ 4474374 (+) False tmem71
TU150599 other upstream 560053 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 560053 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 685919 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 1009201 3016958 ~ 3075901 (+) True G111494
TU150715 other downstream 658 4088644 ~ 4137543 (+) True G111848
TU150718 other downstream 2522 4090508 ~ 4138933 (+) True G111850
TU150765 other downstream 177516 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 411008 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 439929 4527915 ~ 4529749 (+) False dnaaf11

Expression Profile