RNA id: TU150718


Basic Information

Item Value
RNA id TU150718
length 699
RNA type TUCP
GC content 0.43
exon number 2
gene id G111850
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4090508 ~ 4138933 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCAAATTCAAGAGAGATATCAGTTAGCTGGGAGAAACCTGCTGGGCTTGGACAAGATGTCCATAATTTGAGCAACATCGTGGAGTACACGCCAACACAGACAACGGGATGAAAGAGGAAGATCTCCAATGGAACAAAATGATGGCAGGAGCAGAAAAGGCAATAATATCAGAGCTTCAGTCAGATACACAATATGTAGCTGGCAGAAGCAAAGAAAGCATCCCTGTTACTGTACGCACAACAAAACAGGAAAATGCACATCTTGTCGAGTTCCTCAAACATATTAGCAAGAGAATACATTCTGAATCTCCATCAGTTTACAAACTGCCTCTGAAAGAAGAAGATATGGATTTCGATGGGTGCCGGAGGTATAACCTTGGCAAAGAAAGCATGAGGCAAAATCGCACAATAATGCTTCTTGGAGCAACTGGATCAGGAAAGTCTACTCTGATCAATGGAATGATCAACTACATTGTTGGTGTGGAGTGGAAGGACAGTTTCAGATTCAAATTAATTGAGGAGGATCAGACAAGATCACAATCTGAAAGTCAGACATCTGAAGCCACTGTGTACAAAATCAACTACCAAGAGGGGTTTAAAGTCCCCTTCTCTCTGACCATTGTGGACACACCAGGGTTTGGGGACACAAGAGGAATAGGAAGAGACAGGGAGATCACAGAGCAAATCAGGAGGCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150705 lncRNA upstream 2522 4085102 ~ 4087986 (+) True G111844
TU150676 lncRNA upstream 72112 3954028 ~ 4018396 (+) True G111821
TU150751 lncRNA downstream 36597 4175530 ~ 4238745 (+) False G111870
TU150744 lncRNA downstream 98986 4237919 ~ 4238745 (+) False G111870
TU150747 lncRNA downstream 98986 4237919 ~ 4304787 (+) False G111870
TU150749 lncRNA downstream 98986 4237919 ~ 4238745 (+) False G111870
TU150750 lncRNA downstream 98986 4237919 ~ 4238745 (+) False G111870
XM_039816306.1 mRNA upstream 25487 4051320 ~ 4065021 (+) True crfb16
XM_039816103.1 mRNA upstream 92649 3995617 ~ 3997859 (+) True LOC120568532
XM_039816102.1 mRNA upstream 97919 3986445 ~ 3992589 (+) True LOC120568531
XM_039816475.1 mRNA upstream 126455 3959592 ~ 3964053 (+) True dusp28
XM_039816105.1 mRNA downstream 73191 4212124 ~ 4323581 (+) False tmeff1a
XM_039815669.1 mRNA downstream 198152 4337085 ~ 4349158 (+) True cavin4a
XM_039815668.1 mRNA downstream 238232 4377165 ~ 4393309 (+) True ift57
XM_039815666.1 mRNA downstream 277688 4416621 ~ 4418585 (+) True LOC120568271
XM_039814903.1 mRNA downstream 319951 4458884 ~ 4474374 (+) False tmem71
TU150599 other upstream 565459 3500679 ~ 3525049 (+) False LOC120568327
TU150598 other upstream 565459 3511653 ~ 3525049 (+) True LOC120568327
TU150236 other upstream 691325 3388094 ~ 3399183 (+) False LOC120567769
TU150165 other upstream 1014607 3016958 ~ 3075901 (+) True G111494
TU150765 other downstream 126569 4265502 ~ 4326186 (+) True tmeff1a
TU150809 other downstream 360061 4498994 ~ 4539205 (+) False dnaaf11
TU150808 other downstream 388982 4527915 ~ 4529749 (+) False dnaaf11
TU150812 other downstream 389431 4528364 ~ 4529749 (+) False dnaaf11
TU150815 other downstream 389431 4528364 ~ 4539205 (+) False dnaaf11

Expression Profile