RNA id: TU150818


Basic Information

Item Value
RNA id TU150818
length 338
lncRNA type sense_over
GC content 0.50
exon number 3
gene id dnaaf11
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4498994 ~ 4592347 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtctgtctctgtgtgtgtgtgtgtctgtgtgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctctgtgtgtctctgtgtgtgtgtgtctgtgtgtgtgtgtctgtgtgtctctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150813 lncRNA upstream 62 4528364 ~ 4529188 (+) False dnaaf11
TU150819 lncRNA upstream 62 4528364 ~ 4529188 (+) False dnaaf11
TU150820 lncRNA upstream 62 4528364 ~ 4529188 (+) False dnaaf11
TU150824 lncRNA upstream 62 4528364 ~ 4529188 (+) False dnaaf11
TU150831 lncRNA upstream 9061 4518249 ~ 4520189 (+) True G111906
TU150833 lncRNA downstream 35673 4574878 ~ 4592301 (+) False dnaaf11
TU150855 lncRNA downstream 76811 4616016 ~ 4629805 (+) False G111920
TU150860 lncRNA downstream 82675 4621880 ~ 4639567 (+) True G111921
TU150850 lncRNA downstream 89515 4628720 ~ 4635012 (+) True G111920
TU150852 lncRNA downstream 89515 4628720 ~ 4629805 (+) False G111920
XM_039814903.1 mRNA upstream 54876 4458884 ~ 4474374 (+) False tmem71
XM_039814902.1 mRNA upstream 54876 4458884 ~ 4474374 (+) False tmem71
XM_039814904.1 mRNA upstream 54876 4460849 ~ 4474374 (+) True tmem71
XM_039815666.1 mRNA upstream 110665 4416621 ~ 4418585 (+) True LOC120568271
XM_039815668.1 mRNA upstream 135941 4377165 ~ 4393309 (+) True ift57
XM_039814535.1 mRNA downstream 76828 4616033 ~ 4785371 (+) True kcnq3
XM_039814912.1 mRNA downstream 266359 4805564 ~ 4835053 (+) True LOC120567839
XM_039814499.1 mRNA downstream 298259 4837464 ~ 4888212 (+) True oc90
XM_039814498.1 mRNA downstream 300353 4839558 ~ 4888212 (+) False oc90
XM_039816414.1 mRNA downstream 659888 5199093 ~ 5336492 (+) True adcy8
TU150765 other upstream 203064 4265502 ~ 4326186 (+) True tmeff1a
TU150718 other upstream 390317 4090508 ~ 4138933 (+) True G111850
TU150715 other upstream 391707 4088644 ~ 4137543 (+) True G111848
TU150599 other upstream 1004201 3500679 ~ 3525049 (+) False LOC120568327
TU150839 other downstream 6220 4545425 ~ 4546082 (+) True G111910
TU151330 other downstream 1249151 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 1464480 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 1700976 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 1701617 6240822 ~ 6240903 (+) True trnas-uga_21

Expression Profile