RNA id: TU150820


Basic Information

Item Value
RNA id TU150820
length 333
lncRNA type intronic
GC content 0.45
exon number 3
gene id dnaaf11
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4498994 ~ 4592347 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTATACCTGTGAATTTGGTGTGTTAACGTTACCCCATAGCATGCTAACTTTACAAAGCTATCCAAGATGTTACTTTGCTTTCTTCACTAGCtaccaaaatacattttgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtctgtgtgtgtgtgtgtgtctgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150831 lncRNA upstream 8175 4518249 ~ 4520189 (+) True G111906
TU150828 lncRNA upstream 11617 4515700 ~ 4516747 (+) True G111904
TU150797 lncRNA upstream 32473 4494898 ~ 4495891 (+) False G111893
TU150798 lncRNA upstream 32796 4452813 ~ 4495568 (+) True G111893
TU150803 lncRNA upstream 40347 4484634 ~ 4488017 (+) True G111897
TU150817 lncRNA downstream 62 4529250 ~ 4539205 (+) False dnaaf11
TU150818 lncRNA downstream 62 4529250 ~ 4539205 (+) False dnaaf11
TU150833 lncRNA downstream 45690 4574878 ~ 4592301 (+) False dnaaf11
TU150855 lncRNA downstream 86828 4616016 ~ 4629805 (+) False G111920
TU150860 lncRNA downstream 92692 4621880 ~ 4639567 (+) True G111921
XM_039814903.1 mRNA upstream 53990 4458884 ~ 4474374 (+) False tmem71
XM_039814902.1 mRNA upstream 53990 4458884 ~ 4474374 (+) False tmem71
XM_039814904.1 mRNA upstream 53990 4460849 ~ 4474374 (+) True tmem71
XM_039815666.1 mRNA upstream 109779 4416621 ~ 4418585 (+) True LOC120568271
XM_039815668.1 mRNA upstream 135055 4377165 ~ 4393309 (+) True ift57
XM_039814535.1 mRNA downstream 86845 4616033 ~ 4785371 (+) True kcnq3
XM_039814912.1 mRNA downstream 276376 4805564 ~ 4835053 (+) True LOC120567839
XM_039814499.1 mRNA downstream 308276 4837464 ~ 4888212 (+) True oc90
XM_039814498.1 mRNA downstream 310370 4839558 ~ 4888212 (+) False oc90
XM_039816414.1 mRNA downstream 669905 5199093 ~ 5336492 (+) True adcy8
TU150765 other upstream 202178 4265502 ~ 4326186 (+) True tmeff1a
TU150718 other upstream 389431 4090508 ~ 4138933 (+) True G111850
TU150715 other upstream 390821 4088644 ~ 4137543 (+) True G111848
TU150599 other upstream 1003315 3500679 ~ 3525049 (+) False LOC120568327
TU150839 other downstream 16237 4545425 ~ 4546082 (+) True G111910
TU151330 other downstream 1259168 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 1474497 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 1710993 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 1711634 6240822 ~ 6240903 (+) True trnas-uga_21

Expression Profile