RNA id: TU150860


Basic Information

Item Value
RNA id TU150860
length 274
lncRNA type intronic
GC content 0.48
exon number 2
gene id G111921
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4621880 ~ 4639567 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccagttatttcatggatccaggatactatgcatcctgataaagttcccttggcctttggaattaaaatagcccccccacatcatcacatacccttcaccatacccccacatcatcacatacccttcaccatacccccatatcatcacatacccttcaccatacccccacatcatcacatacccttcaacatacccccacatcatcacatacccttcaccatacccccacatcatcacatacccttcaccatacccccccatcatcacataccc

Function

GO: NA

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04974 Protein digestion and absorption
ko05165 Human papillomavirus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150833 lncRNA upstream 29579 4574878 ~ 4592301 (+) False dnaaf11
TU150816 lncRNA upstream 82675 4528873 ~ 4539205 (+) False dnaaf11
TU150817 lncRNA upstream 82675 4529250 ~ 4539205 (+) False dnaaf11
TU150818 lncRNA upstream 82675 4529250 ~ 4539205 (+) False dnaaf11
TU150824 lncRNA upstream 92692 4528364 ~ 4529188 (+) False dnaaf11
TU151187 lncRNA downstream 149060 4788627 ~ 4788876 (+) True G112140
TU151203 lncRNA downstream 249034 4888601 ~ 4891470 (+) True G112155
TU151204 lncRNA downstream 249034 4888601 ~ 4891470 (+) False G112155
TU151205 lncRNA downstream 249034 4888601 ~ 4891470 (+) False G112155
TU151206 lncRNA downstream 249034 4888601 ~ 4890200 (+) False G112155
XM_039816106.1 mRNA upstream 29533 4527422 ~ 4592347 (+) True dnaaf11
XM_039814903.1 mRNA upstream 147506 4458884 ~ 4474374 (+) False tmem71
XM_039814902.1 mRNA upstream 147506 4458884 ~ 4474374 (+) False tmem71
XM_039814904.1 mRNA upstream 147506 4460849 ~ 4474374 (+) True tmem71
XM_039815666.1 mRNA upstream 203295 4416621 ~ 4418585 (+) True LOC120568271
XM_039814912.1 mRNA downstream 165997 4805564 ~ 4835053 (+) True LOC120567839
XM_039814499.1 mRNA downstream 197897 4837464 ~ 4888212 (+) True oc90
XM_039814498.1 mRNA downstream 199991 4839558 ~ 4888212 (+) False oc90
XM_039816414.1 mRNA downstream 559526 5199093 ~ 5336492 (+) True adcy8
XM_039816108.1 mRNA downstream 764886 5404453 ~ 5408621 (+) True LOC120568538
TU150839 other upstream 75798 4545425 ~ 4546082 (+) True G111910
TU150815 other upstream 82675 4528364 ~ 4539205 (+) False dnaaf11
TU150822 other upstream 82675 4528364 ~ 4539205 (+) False dnaaf11
TU150808 other upstream 92131 4527915 ~ 4529749 (+) False dnaaf11
TU151330 other downstream 1148789 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 1364118 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 1600614 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 1601255 6240822 ~ 6240903 (+) True trnas-uga_21
TU151560 other downstream 1611823 6251390 ~ 6321990 (+) True G112400

Expression Profile