RNA id: TU150892


Basic Information

Item Value
RNA id TU150892
length 540
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC120568335
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3800195 ~ 3821190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTGATATTGTTTGCTGtggatttaatttattatattttgctgtGGACAATTTATCTTTTCCCTCTTTCACGAACTGCAACAACAAACACTAATTGACCCACCTGTAGAACCCCGTTCACATCAGCGATCTGATTGGCCAGCTGATCAGACCACTCCCTATTAAAGGAGGCTAGACCTCTTACTGAGGGGGACAACGCTCTGGACGGATAGACCGGCTGTGTCCTGCAGCGGCCTGGCTTGCTGATCTTCTTCTCCCTCGGTGTTGCTGCTGACTGGATCTCCTGTACCCTGGTGGAGCTGAATCCCAGACTCTGCAGTGAAGTGGTCCTTTTCTCCCACACTGATGCGTGGGTATGTTTTAGCATTTGAGCTAAAGGAGTCGTTTTTACTAGTTGTTCATTCCTGTGAAGGTGCCAGATCCTGGGGCCGACGGCAGAGCAGCAGACACGGCAGTATTGTTGATGAGCCCACTTGAAGTAGAGGAAAGGAAAGCTGTCATTCTAGTCACCCGAGACTGGTTTAAAGTTGCCGGGCTACG

Function

GO: NA

KEGG:

id description
ko04145 Phagosome
ko05140 Leishmaniasis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640699.1 lncRNA downstream 681 3800195 ~ 3802495 (-) False LOC120568335
TU150923 lncRNA downstream 78294 3659776 ~ 3724882 (-) True G111946
XR_005640708.1 lncRNA downstream 82054 3718266 ~ 3721122 (-) True LOC120568342
TU150938 lncRNA downstream 101376 3675497 ~ 3701800 (-) True G111960
TU150880 lncRNA downstream 110674 3615146 ~ 3692502 (-) False G111935
TU150988 lncRNA upstream 146804 3967994 ~ 3969218 (-) True G111997
TU151003 lncRNA upstream 218694 4039884 ~ 4040197 (-) True G112007
XR_005640616.1 lncRNA upstream 253539 4074729 ~ 4082082 (-) False LOC120567799
XR_005640614.1 lncRNA upstream 258389 4079579 ~ 4082082 (-) False LOC120567799
XR_005640615.1 lncRNA upstream 258389 4079579 ~ 4082082 (-) True LOC120567799
XM_039815747.1 mRNA downstream 42509 3749457 ~ 3760667 (-) False LOC120568321
XM_039815745.1 mRNA downstream 42537 3749457 ~ 3760639 (-) False LOC120568321
XM_039815744.1 mRNA downstream 43592 3749457 ~ 3759584 (-) True LOC120568321
XM_039815746.1 mRNA downstream 43593 3752770 ~ 3759583 (-) False LOC120568321
XM_039815748.1 mRNA downstream 43594 3749457 ~ 3759582 (-) False LOC120568321
XM_039815750.1 mRNA upstream 40139 3861329 ~ 3871815 (-) True LOC120568324
XM_039816101.1 mRNA upstream 62566 3883756 ~ 3889916 (-) True LOC120568530
XM_039817021.1 mRNA upstream 151142 3972332 ~ 3983995 (-) False proca
XM_039817022.1 mRNA upstream 151142 3972332 ~ 3983855 (-) True proca
XM_039816388.1 mRNA upstream 180251 4001441 ~ 4018262 (-) True saga
TU150514 other downstream 433237 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 574029 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 661306 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 811330 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1225162 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 214352 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 416912 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 416912 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 416912 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 416912 4238102 ~ 4238670 (-) False G112043

Expression Profile