RNA id: XR_005640699.1


Basic Information

Item Value
RNA id XR_005640699.1
length 456
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC120568335
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3800195 ~ 3821190 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCTGTAGTCTGTGAGTGGTATTAACCTGTTGGCTTAATGTCCATAGTggaataagctagctagctacaggctagtgctagcctacatttaatcaccatttAATCAGTGCAGGGAAACGTTTAGCAAGATGTTCATATTAAATCATTGTCCCTGCCCCTTTTAGCAGCCTTAACAACAGATGAGTCAGCAGCAGCCCAGTCTCCCCCTAACTGAGCCCCTCCCTGTCCCAGTGAAGAAGtgacgtccctgGAATCGGCTATCCAAAGCCCCGCTGAAGCAGATATTCTGTGCCGGCGCCAGGAGAAACACGGAGCTGACTCCAGGCTGGACTGGACTTGGTTGTCGTTTCACCCTGGGACAGAATATTGGACAATCCATGGTTCTATTGTCTCCCCTGGTTTTTGAGGAGATTGTGATTTTAATGTCAGTTTAAACTtaacttttaaaatattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150923 lncRNA downstream 75313 3659776 ~ 3724882 (-) True G111946
XR_005640708.1 lncRNA downstream 79073 3718266 ~ 3721122 (-) True LOC120568342
TU150938 lncRNA downstream 98395 3675497 ~ 3701800 (-) True G111960
TU150880 lncRNA downstream 107693 3615146 ~ 3692502 (-) False G111935
XR_005640704.1 lncRNA downstream 107732 3691144 ~ 3692463 (-) True LOC120568339
TU150892 lncRNA upstream 681 3803176 ~ 3821190 (-) True LOC120568335
TU150988 lncRNA upstream 165499 3967994 ~ 3969218 (-) True G111997
TU151003 lncRNA upstream 237389 4039884 ~ 4040197 (-) True G112007
XR_005640616.1 lncRNA upstream 272234 4074729 ~ 4082082 (-) False LOC120567799
XR_005640614.1 lncRNA upstream 277084 4079579 ~ 4082082 (-) False LOC120567799
XM_039815747.1 mRNA downstream 39528 3749457 ~ 3760667 (-) False LOC120568321
XM_039815745.1 mRNA downstream 39556 3749457 ~ 3760639 (-) False LOC120568321
XM_039815744.1 mRNA downstream 40611 3749457 ~ 3759584 (-) True LOC120568321
XM_039815746.1 mRNA downstream 40612 3752770 ~ 3759583 (-) False LOC120568321
XM_039815748.1 mRNA downstream 40613 3749457 ~ 3759582 (-) False LOC120568321
XM_039815750.1 mRNA upstream 58834 3861329 ~ 3871815 (-) True LOC120568324
XM_039816101.1 mRNA upstream 81261 3883756 ~ 3889916 (-) True LOC120568530
XM_039817021.1 mRNA upstream 169837 3972332 ~ 3983995 (-) False proca
XM_039817022.1 mRNA upstream 169837 3972332 ~ 3983855 (-) True proca
XM_039816388.1 mRNA upstream 198946 4001441 ~ 4018262 (-) True saga
TU150514 other downstream 430256 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 571048 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 658325 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 808349 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1222181 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 233047 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 435607 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 435607 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 435607 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 435607 4238102 ~ 4238670 (-) False G112043

Expression Profile