RNA id: TU150904


Basic Information

Item Value
RNA id TU150904
length 741
RNA type TUCP
GC content 0.51
exon number 3
gene id G111942
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3504498 ~ 4036963 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCATTAGTCCATGTTTGTCTTTAGTCCCCATATAACCCGTGCTGACATGAGATGATGTGTGTGTTCCATATGAAGGTGAATCCAGTATATGTAGTGAACTTTGTGCTGTATTGATGAGTAGTTTAGTGATCAGAGTCCATGTAGTTTCCAGGATCAGACTGAATGCAGTGCTGGAAGCTGCTGgtgactgtgtgaatgtgtgtctgtgctgcttgTTGCTGCTGTCAAACTTCAGATGAGCCGGTAGTGAAGCCCGTGGTGAGCGTGTACCCAGCAGCATCCAGAGCCCACCTGGAGGGGAAGAGCTCCCTGCTGTGTCTGGCCTCAGCCATGTTTCCTCCTCTGGTCCAGTTCTCCTGGAAAAGACGAAATGAGAATGGTCCTCTGGAGGAGCTGCCCTCTGATGAGGGAGAGCAGCTGGAGATCAGAGAGTCAGGACACACCGCCTCCATCTTGCTGATCCATCAGCAAGAGAACAGCACATATAAATACCGCTGTGATGTCCTACATGAGGGGGGGACAGTGGAGGCCCAAACAGAACAAGaGGTTCCAGCTCCAGCAGCCTCCTGTCCTCCAGAGAGAGATCCACCAGACCAGCTAGCTCTGGAGGAAGCTGACTtgtcctTCCAGTCCCAGTGCAGGGTGAAGTTGTTCTGTCTGCTGTACACACAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTTTCTCTGCTGATGATCCTCAGAAACAAGGGAC

Function

GO:

id name namespace
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU150988 lncRNA downstream 66324 3967994 ~ 3969218 (-) True G111997
TU150892 lncRNA downstream 214352 3803176 ~ 3821190 (-) True LOC120568335
XR_005640700.1 lncRNA downstream 232036 3800195 ~ 3803506 (-) False LOC120568335
XR_005640699.1 lncRNA downstream 233047 3800195 ~ 3802495 (-) False LOC120568335
TU150923 lncRNA downstream 310660 3659776 ~ 3724882 (-) True G111946
TU151003 lncRNA upstream 2921 4039884 ~ 4040197 (-) True G112007
XR_005640616.1 lncRNA upstream 37766 4074729 ~ 4082082 (-) False LOC120567799
XR_005640614.1 lncRNA upstream 42616 4079579 ~ 4082082 (-) False LOC120567799
XR_005640615.1 lncRNA upstream 42616 4079579 ~ 4082082 (-) True LOC120567799
TU151022 lncRNA upstream 53545 4090508 ~ 4138931 (-) True G112018
XM_039814702.1 mRNA downstream 7956 4021167 ~ 4027586 (-) True cldn15la
XM_039816388.1 mRNA downstream 17280 4001441 ~ 4018262 (-) True saga
XM_039816390.1 mRNA downstream 17280 4002141 ~ 4018262 (-) False saga
XM_039817021.1 mRNA downstream 51547 3972332 ~ 3983995 (-) False proca
XM_039817022.1 mRNA downstream 51687 3972332 ~ 3983855 (-) True proca
XM_039815667.1 mRNA upstream 73783 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039815664.1 mRNA upstream 108900 4145863 ~ 4168656 (-) True slc39a6
XM_039815665.1 mRNA upstream 110800 4147763 ~ 4168316 (-) False slc39a6
XM_039814907.1 mRNA upstream 450365 4487328 ~ 4499789 (-) False LOC120567835
XM_039814906.1 mRNA upstream 450365 4487328 ~ 4499789 (-) False LOC120567835
TU150514 other downstream 665603 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 806395 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 893672 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 1043696 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1457528 2573304 ~ 2578014 (-) True G111573
TU151047 other upstream 201139 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 201139 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 201139 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 201139 4238102 ~ 4238670 (-) False G112043
TU151058 other upstream 230575 4267538 ~ 4284083 (-) True G112046

Expression Profile