RNA id: TU150918



Basic Information


Item Value
RNA id TU150918
length 1012
lncRNA type sense_over
GC content 0.41
exon number 4
gene id LOC120568325
representative False

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 3629565 ~ 3633399 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CATCATGGAGCTGTAATATGATTCTGCTTAATAATTTGGACTGGTTCACCTCAGCAGACACATTCAACAGCAGACAGGTTTTTGTATCACTCAGTTTCACTGTGGGAGGATGGTGGTCTTACAACTATTACTTGATCATTGGCTCTGGAACTAAACTGTTTGTATCAGTTCTCCTGGAAAAGACGAAAGGAGAATGGTCCTCTGGAGGAGCTGCCCCCTGCTGAGAGAGAACAGCTGGAGATCAGAAAGTCGGGATGCACCGCCTCCATCTTGCTGATCCATCAGCAAGAGAAGAGCAAATATAAATACCGCTGCTACGTCCAGCACGAGGGGGGAACAGTGGAGGCCGAAACACAACAAGaGGTTTCTACTCttccaccatcaccaccatctCTTCCACCAGCAACTTCTGTCCCGTCTCAGTACCTCAGTACAGTGGAGGCCCAAACAGTGGAGGCCCAAACAGAACAAGAGGTTTCTACTCTTCCACCATTACCACCATCACTTCCACCAGCAGCTTCTGTCCCGTCTCAGTACCAAGTGAAGTTGTTCTGTCTGCTGTACACCCAGCTGATAGTGAAGAGTCTGGTGTACTGCTGTGGACTCTCTCTGCTGATGATCCTCAGAAACAAGGGACCGTCCACCAACTGAACACATGCTGACTGTTTTCTGCTCGACTTTTCTCTCCAACAAATCTCATAAATTCATCTAATTTATTACTTTGATCAGTAATAACATCAATTATGACGTGTTGTAGTTGTCATCCTAAacatacttatatatatatatatttctgaagTTACTAAGTGTGAATTCTGTGTACTGTTATTTTAATACTATTTGATACTGATTATTTCTATtaaattgattattttctttaaattgtGACTTGTATATTGATAGAAAATGTATGTGAATTATCAGCTGTCTGGTACATATTTTATAGTGTATagtattttcttttgttcttgTTTCTTTTTAATACATTATGCAAATCTTTGTCAAATTCTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150883 lncRNA downstream 11137 3495593 ~ 3618428 (-) False G111935
TU150888 lncRNA downstream 11137 3571974 ~ 3618428 (-) True G111935
TU150875 lncRNA downstream 11137 3592866 ~ 3618428 (-) False G111935
XR_005640698.1 lncRNA downstream 11151 3615179 ~ 3618414 (-) True LOC120568334
TU150882 lncRNA downstream 33529 3495593 ~ 3596036 (-) False G111935
TU150923 lncRNA upstream 26377 3659776 ~ 3724882 (-) True G111946
TU150938 lncRNA upstream 42098 3675497 ~ 3701800 (-) True G111960
TU150939 lncRNA upstream 49905 3683304 ~ 3683612 (-) True G111961
XR_005640704.1 lncRNA upstream 57745 3691144 ~ 3692463 (-) True LOC120568339
XR_005640708.1 lncRNA upstream 84867 3718266 ~ 3721122 (-) True LOC120568342
XM_039816095.1 mRNA downstream 53344 3564546 ~ 3576221 (-) True LOC120568522
XM_039816975.1 mRNA downstream 173031 3448713 ~ 3456534 (-) False LOC120569104
XM_039815749.1 mRNA upstream 38151 3671550 ~ 3706170 (-) True LOC120568323
XM_039816097.1 mRNA upstream 113898 3747297 ~ 3751140 (-) True LOC120568526
XM_039815747.1 mRNA upstream 116058 3749457 ~ 3760667 (-) False LOC120568321
XM_039815745.1 mRNA upstream 116058 3749457 ~ 3760639 (-) False LOC120568321
XM_039815744.1 mRNA upstream 116058 3749457 ~ 3759584 (-) True LOC120568321
TU150514 other downstream 259626 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 400418 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 487695 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 637719 2985332 ~ 2991846 (-) False LOC120568519
TU150296 other downstream 1051551 2573304 ~ 2578014 (-) True G111573
TU150904 other upstream 402143 4035542 ~ 4036963 (-) True G111942
TU151047 other upstream 604703 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 604703 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 604703 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 604703 4238102 ~ 4238670 (-) False G112043

Expression Profile