RNA id: TU151003



Basic Information


Item Value
RNA id TU151003
length 314
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G112007
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4039884 ~ 4040197 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAAACCTTTTCATCCAATAACGTTAATTTCAGCTTTAATATTTCTGACCTTAAGTTcagcaattatttaaaaagtaggAGGATCACAACTCTTTCTACTTCAGATAACAACAAGACTAcattacaacacacagacattataaATGTATAGTAATGGATGTTAGGCGCTCCCCTCCctgctctctttttcctctgttCATCTCAGGTGTTCCTGATTTCTGATTGAGGGGGGCCCCTCCCCTGGATATAAGAGAGGCTGGGAGACAGAAATCTGTCTCTGAGACTGAAGCAGCTGATCACCGTTggtttctcttc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU150988 lncRNA downstream 70666 3967994 ~ 3969218 (-) True G111997
TU150892 lncRNA downstream 218694 3803176 ~ 3821190 (-) True LOC120568335
XR_005640700.1 lncRNA downstream 236378 3800195 ~ 3803506 (-) False LOC120568335
XR_005640699.1 lncRNA downstream 237389 3800195 ~ 3802495 (-) False LOC120568335
XR_005640708.1 lncRNA downstream 318762 3718266 ~ 3721122 (-) True LOC120568342
XR_005640616.1 lncRNA upstream 34532 4074729 ~ 4082082 (-) False LOC120567799
XR_005640614.1 lncRNA upstream 39382 4079579 ~ 4082082 (-) False LOC120567799
XR_005640615.1 lncRNA upstream 39382 4079579 ~ 4082082 (-) True LOC120567799
TU151022 lncRNA upstream 50311 4090508 ~ 4138931 (-) True G112018
TU151023 lncRNA upstream 52368 4092565 ~ 4140920 (-) True G112019
XM_039814702.1 mRNA downstream 12298 4021167 ~ 4027586 (-) True cldn15la
XM_039816388.1 mRNA downstream 21622 4001441 ~ 4018262 (-) True saga
XM_039816390.1 mRNA downstream 21622 4002141 ~ 4018262 (-) False saga
XM_039817021.1 mRNA downstream 55889 3972332 ~ 3983995 (-) False proca
XM_039817022.1 mRNA downstream 56029 3972332 ~ 3983855 (-) True proca
XM_039815667.1 mRNA upstream 70549 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039815664.1 mRNA upstream 105666 4145863 ~ 4168656 (-) True slc39a6
XM_039815665.1 mRNA upstream 107566 4147763 ~ 4168316 (-) False slc39a6
XM_039814907.1 mRNA upstream 447131 4487328 ~ 4499789 (-) False LOC120567835
XM_039814906.1 mRNA upstream 447131 4487328 ~ 4499789 (-) False LOC120567835
TU150904 other downstream 2921 4035542 ~ 4036963 (-) True G111942
TU150514 other downstream 669945 3314646 ~ 3369939 (-) True LOC120568520
XR_005640646.1 other downstream 810737 3204287 ~ 3229147 (-) False LOC120568005
TU150424 other downstream 898014 2985332 ~ 3141870 (-) False LOC120568519
TU150430 other downstream 1048038 2985332 ~ 2991846 (-) False LOC120568519
TU151047 other upstream 197905 4238102 ~ 4238670 (-) True G112043
TU151048 other upstream 197905 4238102 ~ 4238670 (-) False G112043
TU151050 other upstream 197905 4238102 ~ 4238670 (-) False G112043
TU151054 other upstream 197905 4238102 ~ 4238670 (-) False G112043
TU151058 other upstream 227341 4267538 ~ 4284083 (-) True G112046

Expression Profile