RNA id: TU151092


Basic Information

Item Value
RNA id TU151092
length 4423
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G112069
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4429027 ~ 4480919 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTATAACAGTTTTAATGGACGATAAACATTCATTTGTAActtcacacaaaaacattttcactgACACTGGAAAATATCTGACAATATGcaaaacactgtaaaaatttAATCTCAAAACGCGCCGCCATCAACCAGCCCAAAAAAGGGCGACTAACTCATCATCCAAACGTTGCAAAATTTTGAGAATTTAGTGATTTAAACACAGTGATGAACACTGGAAGGAAAGCATTCTGTCACATTGATTCATTCATCAGACCAATAATCTTCTTTAGCGTCTAaacttcagataaaaaaaatctagTTTTGCGCAGCGTTTGGTGTTaaatttttacagttttcagacTTTTATAATATGAGTAcacatgtaatatatatatatatatatatatatatatatatgatgagtACATTACAGTGGAATAAAAACAACAGATTTAATAAGTGCCGTCACAAGCAGAGTATCACATTTCCATCTTTGGAAACAAGTGCAGTCAATGgaaaagaatatatatacatatatgtgtatatatatgtacattacATCACAAACAAGAGCTTATCTAAAGGTTTGATTCATATTAAAGGTGTTTTTGTCACAGACACGTTCAGTCTTGTGCAGGAAATTCTATATTTTACAAATTACGTAcatataaaagaagaaaaagacactTTAACATCGATCATTTAAAGCTGCATCAGCGCGTTATTGGCCACCAGGGGGCAGAAGAACTGACATCTTATTTAAACGTCTCATTGGAAGTTGTGTATTTGTTCACCCGGAGCACGTTCAAGTCCCGACACGACGTAGCAAAAACGTTTATTtaaacatctaaaaaaaatctgccaaaactgttgaaaaaaagagacaaaaacgtggtaaaaagtgttgattttggaGGACGATAAGTGACAACACAAGCGCAAAACTGAAACGGGTCTGCGTTGAACACCCTGCTGCCTtgtaatgctgcgttccagacacaatttttagcccgtaagttacgacttcaagtcccgacttggtagcgttccaggcaaagtcacgacaaGCTAGCTAAAACATTGTGCCGTTGGCAGGGTTCAGGTTAGGCTACCTACCGTTGACGTTAcctagcgctagctgatactagcgatttctagtcggcgacatattttgggcttcctttaataaacataacctgtagtagtacacagtCGTGTGTGTAtcgttttgattacaatgtgtttttttacaatttatgtctatttatttctatttctcaccgttcCAGGATCACTTTCAccggtagaaggttgtgaaaacacaagTTACGGGTTGCCTAGAACGCACCATTAATACCACCAAGGTTTACATACACGCCgctgctgattggctaacaTCTCCGACACAGccacaaaaaaaacctgaaaaaaaaaaaatacaccgtCTGGAGGAAACATGGCGTTTAACCCGAAAACGAGACTGAACGTGCCTCTTATGAATCCAATATTCACTTtccttttagctctgctttggtctccaccaaatCCTGAGAAAACACATCTTCTATATTATATTTCTTTAGCCATGAAACCAAAACTAGAAGCTTGAAAAAAAGCTTCTCAGAGCTGCAGAGTTCAGCATCTTTCACataatttgatccattgttcGTATACAAATATATTgataagtgcagctttaaattctAAGTCATGCAGAgctgtgttaaaaaatattAGTAATATAGATAAATTCCTATTCATTGATGAAGTTTTATCATTTCCTGAATCGTCACATTTCCAAACATTTGGCACTTTGAGTGAATACAAACAGACGATTCAGAAATATACATAATAACTTTACGTAAAGCacacgttaaaaaaaaagagacatgtGACTCTTAAAAGGGCCGGTCTGTGTCTTAAAGGGCCGGTCTGTGACTCTTAAAGGGCCAGTCACACCAGAATTGTAAAAGGGcgaaatgttattaatttgtctAATTCTTTgctacatttaaataaacatatgATCCCGCTAGCATGTCAGCGGCTAGCTTGGCAGTTACAGTAACGTTATTAGCCCTAAGACACACATTAATCTTGCTGAGTCATTGTCTGGTGTGACTGGATGTTAACCCTTCATGTTACACATCTGATGCCACGTTTACGTCATATACGATGGACGGTTCGCGATGGAAAAGCTTCCCGTGTTCATTACGACTTGTGTTCACGCTAACAagttttgctaaaaactacatcCATTAAATTTGGGTTTAATTACCTCAGAAGACAGACTTTGGTTAGTGTGAGGCATCCAGGCACTTCCGTATTATTATTTAGCGCCAAGTCGTAAACACTGAAGCTTTccggtaaaaaaaacaaaacaaaaaaatcgcATGTTTCCCCGGTCGTGATTACAACTCGAAAACAGTATTTACTGAAATCAGAAACTGGTATTTACGGTAATTCTTGAGACTGTCTGCCCCCTGAAAAACGCCCACATAAGTAGTTTATTCAAGTCGCGATTATGactcatattttacatttaaagtggcggcgccctctagtggtcgtagtagttctgaccggagcaaagcaggaagtaaggtgacgaaGTATAAGAGCACCAAATGTCCTGGTAGCGAATTTACGAATCCTAcaatggccacgccaagacccgcccttcgaCCGCTAccattggccaggcgtccatgcttacgaaAGGTAACGTAACCCAATTAgctcaggtcctatcccctgaccaatcggctatcctaaccttaatcactcgaggtcaatgcctaaccccaaccaatcgagctgctattGAAGGGTGGGTCTttgcgtggccatagtaggatttgTGATTTGGCGTCCTGGTAAGGAGGTTGGTgggggatggatgggtcaaacaaacacaggactttcacccaggagaccgggggttcatgtcccgtttgaAAAGCAAAGTAAAAACCAAAAAGAGCCTGGTTCTGCCTGTTAAAAATaggtttttcctcgccactgtcgcaccatTGTTGGgtttctgtaaattatagagtgtggtctagacctactctatctgtagggtgtcctgagataacttctgctATGATTTGACGCTATAAATAGAATTGAAGTGAAGTAGCGTCTGATTTGAACCCTaaaaaccaccatctttttatcaactttACTCAGTAGTTTCTGTGTCTAAACCGAACCAAACCGCGACCATTACCTTCCCCCATGAGGTCGAACATATCgccgtatggtttggaggactggttgTTCCTATTAGACATAAACGTGACATGAacagaatttttattttttttggcctaATCCATTCAGACGATGTGGAACATGAAGAGCGAAAGATAAAACTCTCCGAAGTCACtgaagttcagttcacaaaaaacacacatttaaaactttACATTTCACTCAGAAAGAGCTGATTTGTGACAAAAATAAAGCACAGCTCATCTCTTCCTGCTTCAGGTTTGCTAAAAGTCTTGGCGTAGTTTGAGGCCCCCAAAACATGATTGAATTTGAAAAAACGTTATAAAGTCAAAAACCTTATAAAGCCGTACAGTACGTGTTGTTTTACATTTCTTAGtcgcagcctcctgccagatAGAACATGTCTTGGTCTTTTCACAGAGAGATAACTGACCCATACAGACATGAAGAACGATTGTGACTTTAAAGATTATCTCCCTGATCCCAAAATGTTGCTCCCGCCTCACAGCTCATAGTTAAGTTTCTTCCATTTTCTGGAATTATTGCTCCCTCAGAAAGTACAATCCCTGTTTTCCAAATAAGAGTAAGATGTGAAGAGGTATAAATCTTCACATAGAAGCAGACCTGACTCGCGCAGGAGTTGTAAATAGGTGATGGCTTTTCCTGCCCGTGGTGCCAGCTGGGTGGAGTTTGTCCCTAACAACGTCACAAAGTGTTCACACATGGACTTAgaaggccctattttaacgatcttagcgtacaaatggaacgcaccaaAGAGTAGGGGTGTAAAAAACTTAATTTCACTAAGGGGCCACACTGGagaatgagaatcacatcaagggccagacactaagggccctattttaacgatctgagtgcacggtgtgaagcgcctggtgcaggtgtgtttagggcatgtccaaatccacttttactAGTTTGACGTCGGAAAAAAAGGGTCcatgtgccgggcgcctggtcctaaagggttgtacttagtgtcttcattaatcagaggtgtgttttgggcgtaacatgcaatcaaccaatcagagatcatctcccattccctttaaaagccaggcgcgtttggaccttggagcattgctgttatgatggaggatttgcaccttaatatttgtatttgtaatcttctgcatgtgtgtgtgtgtgtgtgtgtgtgtgtGGTTGTGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151083 lncRNA downstream 19560 4392850 ~ 4409467 (-) True G112061
TU151062 lncRNA downstream 122304 4306203 ~ 4306723 (-) True G112050
TU151060 lncRNA downstream 140720 4287779 ~ 4288307 (-) True G112048
TU151052 lncRNA downstream 190357 4238102 ~ 4238670 (-) False G112043
TU151125 lncRNA upstream 8967 4489886 ~ 4490333 (-) True G112091
TU151126 lncRNA upstream 10601 4491520 ~ 4492377 (-) True G112092
TU151128 lncRNA upstream 14445 4495364 ~ 4542182 (-) True G112094
TU151131 lncRNA upstream 20175 4501094 ~ 4593673 (-) False G112095
TU151132 lncRNA upstream 20175 4501094 ~ 4608993 (-) False G112095
XM_039815664.1 mRNA downstream 260371 4145863 ~ 4168656 (-) True slc39a6
XM_039815665.1 mRNA downstream 260711 4147763 ~ 4168316 (-) False slc39a6
XM_039815667.1 mRNA downstream 307676 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039814702.1 mRNA downstream 401441 4021167 ~ 4027586 (-) True cldn15la
XM_039816388.1 mRNA downstream 410765 4001441 ~ 4018262 (-) True saga
XM_039814907.1 mRNA upstream 6409 4487328 ~ 4499789 (-) False LOC120567835
XM_039814906.1 mRNA upstream 6409 4487328 ~ 4499789 (-) False LOC120567835
XM_039814905.1 mRNA upstream 6409 4487328 ~ 4499788 (-) True LOC120567835
XM_039814909.1 mRNA upstream 24803 4505722 ~ 4510614 (-) True LOC120567837
XM_039814908.1 mRNA upstream 25389 4506308 ~ 4510611 (-) False LOC120567837
TU151058 other downstream 144944 4267538 ~ 4284083 (-) True G112046
TU151047 other downstream 190357 4238102 ~ 4238670 (-) True G112043
TU151299 other upstream 1183085 5664004 ~ 5668687 (-) True G112233
TU151457 other upstream 1259726 5740645 ~ 5746081 (-) False LOC120568546
TU151454 other upstream 1312244 5793163 ~ 5852447 (-) True G112328
TU151456 other upstream 1312244 5793163 ~ 5852447 (-) False G112328
XR_005640645.1 other upstream 1693637 6174556 ~ 6175551 (-) False LOC120567959

Expression Profile

TU151092 Expression in all Baseline Samples

Bar chart with 13 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 20.
End of interactive chart.

TU151092 Expression in each Bioproject

Bar chart with 8 bars.
TU151092 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU466070 True 19919 lncRNA 0.36 2 CI01000299 3893020 ~ 3912958 (+)