RNA id: TU151101


Basic Information

Item Value
RNA id TU151101
length 449
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC120568277
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4429827 ~ 4430354 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCAATCACAGACGATGAGTGCAGTAAGCCAAGTTTTGTtaggcctgctgctgctgtggctgctgctgctggtagcTCTCGGTCTctgctctccccctcccctctgtccTTAATTGCAGGAGTgaagtctggtgtgtgggagtCAGGGTTCCAGCTGCAGCTCATCTACACTAATCACCTCTGCTACAAATATCTGGTCAACCTACCACTCCTCGTTGGATCATAGTCAAGACAACACTTCTTGGAACCTGACTCCTGCTGCCACTTCACTCCTGCCATCCACCATTCCTGCTCTCTACACTGGATCTCAGGACTATTGGACATGGACACTTGGACATTACGGTACCACTCCCGCTCTGTACCCTGGATCTGGAATCCATTGGACTTTGCTTTTTCCTGGTTCCATTCCTGAACTTGAACATTTGCAAATAAACCTGTTAAACTTTCA

Function

GO:

id name namespace
GO:0071203 WASH complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151083 lncRNA downstream 20360 4392850 ~ 4409467 (-) True G112061
TU151062 lncRNA downstream 123104 4306203 ~ 4306723 (-) True G112050
TU151060 lncRNA downstream 141520 4287779 ~ 4288307 (-) True G112048
TU151052 lncRNA downstream 191157 4238102 ~ 4238670 (-) False G112043
TU151117 lncRNA upstream 38003 4468357 ~ 4469023 (-) True G112086
TU151125 lncRNA upstream 59532 4489886 ~ 4490333 (-) True G112091
TU151126 lncRNA upstream 61166 4491520 ~ 4492377 (-) True G112092
TU151128 lncRNA upstream 65010 4495364 ~ 4542182 (-) True G112094
TU151131 lncRNA upstream 70740 4501094 ~ 4593673 (-) False G112095
XM_039815664.1 mRNA downstream 261171 4145863 ~ 4168656 (-) True slc39a6
XM_039815665.1 mRNA downstream 261511 4147763 ~ 4168316 (-) False slc39a6
XM_039815667.1 mRNA downstream 308476 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039814702.1 mRNA downstream 402241 4021167 ~ 4027586 (-) True cldn15la
XM_039816388.1 mRNA downstream 411565 4001441 ~ 4018262 (-) True saga
XM_039814907.1 mRNA upstream 56974 4487328 ~ 4499789 (-) False LOC120567835
XM_039814906.1 mRNA upstream 56974 4487328 ~ 4499789 (-) False LOC120567835
XM_039814905.1 mRNA upstream 56974 4487328 ~ 4499788 (-) True LOC120567835
XM_039814909.1 mRNA upstream 75368 4505722 ~ 4510614 (-) True LOC120567837
XM_039814908.1 mRNA upstream 75954 4506308 ~ 4510611 (-) False LOC120567837
TU151058 other downstream 145744 4267538 ~ 4284083 (-) True G112046
TU151047 other downstream 191157 4238102 ~ 4238670 (-) True G112043
TU151299 other upstream 1233650 5664004 ~ 5668687 (-) True G112233
TU151457 other upstream 1310291 5740645 ~ 5746081 (-) False LOC120568546
TU151454 other upstream 1362809 5793163 ~ 5852447 (-) True G112328
TU151456 other upstream 1362809 5793163 ~ 5852447 (-) False G112328
XR_005640645.1 other upstream 1744202 6174556 ~ 6175551 (-) False LOC120567959

Expression Profile