RNA id: TU151125


Basic Information

Item Value
RNA id TU151125
length 396
lncRNA type intronic
GC content 0.42
exon number 2
gene id G112091
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4489886 ~ 4490333 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAGCTGGCTGTTCTGGGTGctgttgtgtagttgacagatgaaagaaagaaaaaaaaatttcaaaataaatgcgacttatagtccggaaaatacggtatctataaatgctttaggctgccctaaaagTTATTATAGGACCAGAtgaatatgcaactcaattttacaCAAtacatgtagtagggggtccctgatcagtctctctttcagttaaggggtccttggcttaaaaaaacgtttAAGACCCCTGATGTAGACCCCTGATGTAGACCCCTGATGTAGACCACTGATGTAGACCACTGATGTAGACCCCTGATATAGACCCctggttctcaagcttttttcaataatgttccccctttCAACGTTGTTTctaagccatgtaccccctaaccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151092 lncRNA downstream 8967 4429027 ~ 4480919 (-) True G112069
TU151117 lncRNA downstream 20863 4468357 ~ 4469023 (-) True G112086
TU151101 lncRNA downstream 59532 4429827 ~ 4430354 (-) True LOC120568277
XR_005640694.1 lncRNA downstream 59659 4429827 ~ 4430227 (-) False LOC120568277
TU151083 lncRNA downstream 80419 4392850 ~ 4409467 (-) True G112061
TU151126 lncRNA upstream 1187 4491520 ~ 4492377 (-) True G112092
TU151128 lncRNA upstream 5031 4495364 ~ 4542182 (-) True G112094
TU151131 lncRNA upstream 10761 4501094 ~ 4593673 (-) False G112095
TU151132 lncRNA upstream 10761 4501094 ~ 4608993 (-) False G112095
TU151138 lncRNA upstream 10761 4501094 ~ 4539205 (-) True G112095
XM_039815664.1 mRNA downstream 321230 4145863 ~ 4168656 (-) True slc39a6
XM_039815665.1 mRNA downstream 321570 4147763 ~ 4168316 (-) False slc39a6
XM_039815667.1 mRNA downstream 368535 4110746 ~ 4121351 (-) True si:ch73-170d6.2
XM_039814702.1 mRNA downstream 462300 4021167 ~ 4027586 (-) True cldn15la
XM_039816388.1 mRNA downstream 471624 4001441 ~ 4018262 (-) True saga
XM_039814909.1 mRNA upstream 15389 4505722 ~ 4510614 (-) True LOC120567837
XM_039814908.1 mRNA upstream 15975 4506308 ~ 4510611 (-) False LOC120567837
XM_039814910.1 mRNA upstream 29028 4519361 ~ 4527181 (-) True si:dkey-7l6.3
XM_039815921.1 mRNA upstream 404928 4895261 ~ 5063854 (-) True efr3a
XM_039815920.1 mRNA upstream 404928 4895261 ~ 5048654 (-) False efr3a
TU151058 other downstream 205803 4267538 ~ 4284083 (-) True G112046
TU151047 other downstream 251216 4238102 ~ 4238670 (-) True G112043
TU151299 other upstream 1173671 5664004 ~ 5668687 (-) True G112233
TU151457 other upstream 1250312 5740645 ~ 5746081 (-) False LOC120568546
TU151454 other upstream 1302830 5793163 ~ 5852447 (-) True G112328
TU151456 other upstream 1302830 5793163 ~ 5852447 (-) False G112328
XR_005640645.1 other upstream 1684223 6174556 ~ 6175551 (-) False LOC120567959

Expression Profile