RNA id: TU151202


Basic Information

Item Value
RNA id TU151202
length 2974
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G112154
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 4891553 ~ 4894526 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacttgacattaatcaaagtgacattaccagaagttgtcttggtcatgacaagttgacattaaattagtttgggatgtctttgtcatgacaacttgacattaaccaggatgacattaccagaaaatgtatttgtcatgacaacttgacataatgtcatcctgtttaatgtcaagttgccTTAATAAGGACACTTCAAAGAaattttatgtcaagttgtcatgacaaagacatcctctggtgatgtcatcctggttaatgtcaagttgtcataatcaagacgacccaaacaatgtcaacttgtcgtgacgaaaaccaaatgacacttaatgacagaagtcataaacgtttatgacttgtttataacgtttatgacgcgttcatgacagtgtcatgtcagagttatgacagtgtcatgtcacgattatgtcgataccttcaagtaacgTGTTACCAAGTTAATTATTATAAAGTGCTCTACTATGGCTCGGCTACAGCACTGTGAGCTGTCTGCAACACCTGCAGACAAACGTTTTTTATTAGATATTTTTTGACTGTGTATTATGTTTAGAGTTTCATCTTTATTTCATACTTTctcaaagcatttaaacaaacttttttttgtcaattttgacttaaagattttcattgtAACTGTGAACGCATACCGGTTCCAAATATCcgttatcggtttcattaactactaataatcggtatcgatatcggccttgaaaaaccagtatcgaTAGTTTTTAGcctatactgtatttgtttgcaTTTCGGCAGATTGGCGAATGATCCGGTGGATGTGCAGACAACTGTCTCTGGATTCGGACTCTGAGAAGAAGTCAGTGATTTGACCCTGATTGGAGCAATCAGGCGCTAACCTCTTAAAGTGCCTTTATAGCCTCTCCGAGCTGTGTGTCACAGACTCTGCTGAGCGTGCTGATGACAGCCATTGATTACAtatttactttttcatcatgtgtCGGACCAAGGCAACAAGTTGTGCAAATAACCTCAATCAAACCTCAGAGATCTGTGTGATTGTACTGCCAGATTCACACTCTGGAAACTAAATGGTTCTCTGCTTTTTAAAAGGCCTAAATGGCTCTAAACAACACGTGTCAAACCCaaaggcccgtgggccaaatccggGTCCCTTGCAAATTTTGACCCGGCCAACATATCAATTTAGGTCTACAATAAATGTTGACCCATCTAGTTGTGCGCTGAGCATTGTCATTATAAAGACATTCAAAATTCATCGGAATATCAATGCtggttaataaataaaaagcagttTGATGAAGTGGTTGTTGTTTCCCGGCAGTCTTTTAGAAGGTTTGGTTTCTGTCCCGATCTGAAATGCAGACATTTCTCTGTGAACacaacttaaaggtgctgtaggtaggattgggaagatccaggacttagccaaagaatttgaacatcgacaacttctcagtccctccccccgctttccgctaaagcccaaaacagtctcctaagcccctccccccaaaagggagaatgaatgcgtgtgcatgagcagtgattgacacgcagttagacacccccgccctgattggtgcatctgaacagggagtggtggatttCTGTAAATCacactccaggctgtaggtggagccagaggagctggatttatttttttaatgacctgcttcatgtagttctactggaacatagggtcagtttcagcagatatgacagaaagatAGTTTTATAactcttacctactgcacctttaacactTCAAGCCGCAAGAGAAAATGTTCAACTGTGAAACAGTTTTTGCAGAATAATCGGAGTGAATCTGGAGCTGAGTCTTCTGGATGGAAGAAGTCTGGAAGGATTATGTAACTGAGACTCTGCGAGCTGCAACTTCTGCGGGAACATTAAACTCTGGATGCTAAAATTACCGCTGATTTAACTCTTCTCTGTTGTAAGCAAAAATACCTGACATCCTCTCACTTAAAGATATAATATTCACGAATTTCTCAGCATATTTGAAATGATATAATAGAGAAAGTAACACTGAGACAATTTCTCCCGCGTGGATAAGAACTGCACAATCCCGTTGAAACCCTGAACTGTCGACGTCATCGTAAACGACAACAAATAAACAAGAAATACATTTTCCCAATCTCTACCAGGCAACAATTCAACCGTACAGGATGCATACAATGTACAAAAATATATGATATACTGCTATGATGACACATTCATAAAGGAAGTGATCGTATCTAAGCAAACATCTACCGTTTGAATCGGACTTTTCTCCAAACTTAAAAGCAGTTTCCGCTGCGCTGGCTTATTTTACATCAGTTTGACGAAAAATCTGATTTTAGAAAATACTAATAACTTGTTTAGATGGATTTATATTCCCCGGTTGACGACGAGATATTAAAATACCGTGCAGTTAGTTTATATAATGCATGTTTCTAAGTCAAGCTATGATAACTGTGATATGAAAATCAAAAGAGTTTGCATTTAAAGCTAAGACGTTATGCAGATAAAAATCACTTTAATGCATCGGTGGAGGAGAGTTCTTTATACAGATGGAAAATATCAAAagggatttttttattatttcgaGGCTGCTCTGCTCAGAAAACTACTGCAAACGCTTCAAGTAATGTGTCATGTTGGGGATCAGTGTGCCAACCTTCTCGTTCAGGAACACAACCTGCGCTCGACAACCTTTAACGTACAAAACCATCTGGAAACGTACAAAAATCCATCAAAACGCAAACAGCttcaacctcttctctctcttctcttacaTTCACTTTCCCGTCTTATTTCTCCATCGTTCAGCATCGAATTTAAACTCTAAACAGAGGAAAGGTGCAACGAGAACAAGCCGGACCGAAATTCCGGCAGCAAtttggtgtttccccctctcattctccctgctctggcgtttccccctctcattccccctgctctggc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151203 lncRNA upstream 83 4888601 ~ 4891470 (+) True G112155
TU151204 lncRNA upstream 83 4888601 ~ 4891470 (+) False G112155
TU151205 lncRNA upstream 83 4888601 ~ 4891470 (+) False G112155
TU151206 lncRNA upstream 1353 4888601 ~ 4890200 (+) False G112155
TU151187 lncRNA upstream 102677 4788627 ~ 4788876 (+) True G112140
TU151254 lncRNA downstream 341858 5236384 ~ 5236973 (+) True G112193
TU151256 lncRNA downstream 382265 5276791 ~ 5277061 (+) True G112195
XR_005640602.1 lncRNA downstream 503083 5397609 ~ 5401816 (+) True LOC120567662
XR_005640631.1 lncRNA downstream 515425 5409951 ~ 5412220 (+) True LOC120567911
TU151278 lncRNA downstream 526505 5421031 ~ 5486593 (+) True G112217
XM_039814499.1 mRNA upstream 3341 4837464 ~ 4888212 (+) True oc90
XM_039814498.1 mRNA upstream 3341 4839558 ~ 4888212 (+) False oc90
XM_039814912.1 mRNA upstream 56500 4805564 ~ 4835053 (+) True LOC120567839
XM_039814535.1 mRNA upstream 106182 4616033 ~ 4785371 (+) True kcnq3
XM_039816106.1 mRNA upstream 299206 4527422 ~ 4592347 (+) True dnaaf11
XM_039816414.1 mRNA downstream 304567 5199093 ~ 5336492 (+) True adcy8
XM_039816108.1 mRNA downstream 509927 5404453 ~ 5408621 (+) True LOC120568538
XM_039815523.1 mRNA downstream 607157 5501683 ~ 5668717 (+) False myo10
XM_039815522.1 mRNA downstream 607158 5501684 ~ 5668717 (+) True myo10
XM_039816132.1 mRNA downstream 893697 5788223 ~ 5789417 (+) True LOC120568547
TU150839 other upstream 345471 4545425 ~ 4546082 (+) True G111910
TU150815 other upstream 352348 4528364 ~ 4539205 (+) False dnaaf11
TU150822 other upstream 352348 4528364 ~ 4539205 (+) False dnaaf11
TU150808 other upstream 361804 4527915 ~ 4529749 (+) False dnaaf11
TU151330 other downstream 893830 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 1109159 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 1345655 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 1346296 6240822 ~ 6240903 (+) True trnas-uga_21
TU151560 other downstream 1356864 6251390 ~ 6321990 (+) True G112400

Expression Profile