RNA id: TU151305


Basic Information

Item Value
RNA id TU151305
length 221
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G112237
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 5699334 ~ 5699554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacaattacaaattCAAAGgtcttgaaacaggtttaatatcctgtgtgtctgtcgctgatatgcacctgtaacccagtcaaggaaagggttaacagaaacgtagtgttggccaatcagaggacgttgtgccagactcccgcctttggctgagtctctatctgatctgtcagagggagagcaggagtgagGTTctgaagtttaacgttggttgtcaccagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151278 lncRNA upstream 212741 5421031 ~ 5486593 (+) True G112217
TU151280 lncRNA upstream 217043 5421031 ~ 5482291 (+) False G112217
XR_005640631.1 lncRNA upstream 287114 5409951 ~ 5412220 (+) True LOC120567911
XR_005640602.1 lncRNA upstream 297518 5397609 ~ 5401816 (+) True LOC120567662
TU151256 lncRNA upstream 422273 5276791 ~ 5277061 (+) True G112195
TU151314 lncRNA downstream 6077 5705631 ~ 5706883 (+) True G112246
TU151321 lncRNA downstream 19867 5719421 ~ 5720640 (+) True G112252
TU151353 lncRNA downstream 194369 5893923 ~ 5898411 (+) True LOC120568048
XR_005640654.1 lncRNA downstream 196323 5895877 ~ 5898212 (+) False LOC120568048
TU151367 lncRNA downstream 226324 5925878 ~ 5928002 (+) True G112282
XM_039815523.1 mRNA upstream 30617 5501683 ~ 5668717 (+) False myo10
XM_039815522.1 mRNA upstream 30617 5501684 ~ 5668717 (+) True myo10
XM_039816108.1 mRNA upstream 290713 5404453 ~ 5408621 (+) True LOC120568538
XM_039816414.1 mRNA upstream 362842 5199093 ~ 5336492 (+) True adcy8
XM_039814499.1 mRNA upstream 811122 4837464 ~ 4888212 (+) True oc90
XM_039816132.1 mRNA downstream 88669 5788223 ~ 5789417 (+) True LOC120568547
XM_039815242.1 mRNA downstream 217595 5917149 ~ 5924931 (+) False rnf182
XM_039815241.1 mRNA downstream 219695 5919249 ~ 5924931 (+) True rnf182
XM_039815244.1 mRNA downstream 237755 5937309 ~ 5971411 (+) True ranbp9
XM_039815246.1 mRNA downstream 284303 5983857 ~ 5989285 (+) False epdr1
TU150839 other upstream 1153252 4545425 ~ 4546082 (+) True G111910
TU150815 other upstream 1160129 4528364 ~ 4539205 (+) False dnaaf11
TU150822 other upstream 1160129 4528364 ~ 4539205 (+) False dnaaf11
TU150808 other upstream 1169585 4527915 ~ 4529749 (+) False dnaaf11
TU151330 other downstream 88802 5788356 ~ 5789292 (+) False LOC120568547
TU151409 other downstream 304131 6003685 ~ 6016600 (+) False LOC120568055
unassigned_transcript_535 other downstream 540627 6240181 ~ 6240262 (+) True trnas-cga_6
unassigned_transcript_536 other downstream 541268 6240822 ~ 6240903 (+) True trnas-uga_21
TU151560 other downstream 551836 6251390 ~ 6321990 (+) True G112400

Expression Profile