RNA id: TU151309


Basic Information

Item Value
RNA id TU151309
length 254
lncRNA type intronic
GC content 0.52
exon number 1
gene id G112241
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 5697688 ~ 5697941 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gattgagaacaaattctcatttgcgaCGACCagtgtcacatacacacagttacacattcaaaCCTgaaagctgcccagtacaaccacagtctgatctgctggccactgagcagctccactggagcggttggggttaagggccttgctcaagggcacctcagtggtggtaatgagggagggacaagcactgctctttcactttccccaccctgATTTTATCCTGTTGGTCTGGGGATTAAACCGGCGACCTCCCg

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0051246 regulation of protein metabolic process biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0052548 regulation of endopeptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640670.1 lncRNA downstream 39326 5652999 ~ 5658362 (-) True LOC120568187
TU151273 lncRNA downstream 310937 5386550 ~ 5386751 (-) True G112212
TU151258 lncRNA downstream 497580 5199742 ~ 5200108 (-) True G112197
TU151257 lncRNA downstream 498198 5199245 ~ 5199490 (-) True G112196
TU151251 lncRNA downstream 501874 5195612 ~ 5195814 (-) True G112191
TU151313 lncRNA upstream 6355 5704296 ~ 5704574 (-) True G112245
TU151322 lncRNA upstream 22716 5720657 ~ 5721970 (-) True G112253
TU151460 lncRNA upstream 76472 5774413 ~ 5791763 (-) True G112332
TU151484 lncRNA upstream 224806 5922747 ~ 5993773 (-) True G112352
TU151530 lncRNA upstream 384700 6082641 ~ 6105817 (-) False G112383
XM_039816265.1 mRNA downstream 211027 5423991 ~ 5486661 (-) True basp1
XM_039816107.1 mRNA downstream 548987 5108041 ~ 5148701 (-) True LOC120568537
XM_039815923.1 mRNA downstream 649032 4906389 ~ 5048656 (-) False efr3a
XM_039815920.1 mRNA downstream 649034 4895261 ~ 5048654 (-) False efr3a
XM_039815113.1 mRNA upstream 7663 5705604 ~ 5718217 (-) True znf622
XM_039816131.1 mRNA upstream 25792 5723733 ~ 5746068 (-) True LOC120568546
XM_039815118.1 mRNA upstream 112385 5810326 ~ 5812362 (-) True LOC120567975
XM_039815115.1 mRNA upstream 144588 5842529 ~ 5868410 (-) False LOC120567973
XM_039815116.1 mRNA upstream 144588 5842529 ~ 5868384 (-) False LOC120567973
TU151299 other downstream 29001 5664004 ~ 5668687 (-) True G112233
TU151058 other downstream 1413605 4267538 ~ 4284083 (-) True G112046
TU151047 other downstream 1459018 4238102 ~ 4238670 (-) True G112043
TU151457 other upstream 42704 5740645 ~ 5746081 (-) False LOC120568546
TU151454 other upstream 95222 5793163 ~ 5852447 (-) True G112328
TU151456 other upstream 95222 5793163 ~ 5852447 (-) False G112328
XR_005640645.1 other upstream 476615 6174556 ~ 6175551 (-) False LOC120567959
unassigned_transcript_509 other upstream 502721 6200662 ~ 6200743 (-) True trnas-uga_1

Expression Profile