RNA id: XM_039816131.1


Basic Information

Item Value
RNA id XM_039816131.1
length 2425
RNA type mRNA
GC content 0.41
exon number 6
gene id LOC120568546
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 5723733 ~ 5746081 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGACTCTAAAGCAGCACATCTGCATCTGCTCTCTACAATCCAAACATGGGAAGCCCATTCAGCCTACTCATCCTATTCAGCCTATTCAGCAGATATGCTCAGCAGCAGACCTGCTCTTCTCTTCATAACCCAAATATGGTCTGCAAATATGCCGAAAATGAACAGACCATATATAATAATGAGGAGATCAGGATTGTGTTGGTGGGGAAGACCGGAGCTGGGAAGAGCGCCACAGGAAACACCATTCTGGGAGAACAGTATTTTAAAACCGATTTCTCTCCTAAATCTTTGACTAAACACTGTGCTAAGGCCAATTCTAAAGTGGATGGACTAAAGATTGCTGTTATTGACACTCCAGGTGTGTTTGACACGAGAATTGATGAAAAGAAAACCATTAAAGATATTACCCAGAGCGTTGCTTATGCTTCTCCTGGACCTCACATCTTCCTGGTCGTCATCAAACTGGACAGATtcacagaggaagaaaagaagacGGTGCAGAAGATTCAGGAAATCTTCGGAGAGGAAGCagacaaatacagcatggttcTCTTTACCCATGGTGACCAGCTCAAAGGGAAACCTATTGAGAAGTTCTTGAAGGACAGCGAAGAGCTGCAGGAACTTGTGGACAAATGTAACGGCCAGTACCACGTCTTTAATAATGAGATGAATGATCATTCTCAGGTCAGGGAGCTGCTCGACAAGATCAGAAACATAACAGAGAAGAACGGAGGAAGCCATTACACCACTGAAATGTTCCAGGAGGCAGAGAGGAAGATAGGAGAGGAGAAACGACGCATCcttaaagagaaagaagagcaaatgcgcaaaaaggaagaggaaataaagaagaaaatagaggaaaAGTATGAGTATGAGCTACAAATAGGAAAACCAGCTGAGTGGATGAAAATGATAGTTGCAGTTCGTGACAGAGAAATGGAGACGAGTGTAACCATATATAGGGTTGCGCAGGAAAATTATGCCAGACTGGAAGCTGAGAACAGTTGTTTAATACTTTACCTGATAAAAGTTAtcttcaatttttttaaaaatgtttgggGGAAACAGCAGACCTGCACTTCTCTACATAACCCAACAATGGCCAGCAAATACTCCAAAAATGAACCGACCATACACAATAATGAGGCACTCAGGATTGTGTTGGTGGGGAAGACCGGAGTTGGGAAGAGTGCCACAGGAAACAGCATTCTGGGAAAACTTTGCTTTAAATCAGAGTTTTCTTTTAACTCTTTGACTGAAGAATGTGAAAAGGTTTTTGGTGTAGCGGATGGGCAATTGGTTTCTGTTATTGACACCCCAGGTCTGTTTGACACCAGCGTTGATGAAAAGAAAACGAGGACAGATATTGCCCAGAGCATTTCTTATGCTTCTCCTGGACCTCACATCTTCCTGGTCGTTATCAAAATAGGCCGATacacagaggaagagaagaagacaGTTCAGAAGATAAATGAACTTTTTGGTGAGGATGCAGAAAAATACAGCATGGTTCTCTTTACCCATGGTGACCTGCTCAAAGGGAAAACTATTGAGGAGTTATTGACGAACAGCAGAGACCTGCAGGAACTTGTGGCCAAATGTAACGGCCAGTACCAAGTCTTCAATAATGAGGTCAAGGATCGTTCTCAGGTCAGGGAGCTACTCAACAAGATCAGAAACATAATAAAGAAGAACGGAGGAAGTCATTACACCACTGCAATGTTCCAGAGGGCAGAGAGGGCAATAGAAGAGGAGAAACAACGAATCcttaaagagaaagaagagccACTgcgcagagagagggaggaactgAAGAAGAAACTAGAGGAAATGCTTAGAAAACAAATGAGAGAAGAGAAGGctgacaaggagagagagaaaaagctaATGGTAGCTCATGAACAAGAAATGGACGAGAAAACGAAGCAACTGAGCGAATTGCAGGAAAAGCAAGCTAGACAAGAAGCTGAGGAAAGCACTGGCGTTCTCAAAATTATAGTTTTGGTTGCATCAGCATTAGCCTTGGGTGctgtttttattgtgaaagcaAGAAAATAGCTGTATTGATATTTGGCTGTAACATGCTGCATCTTGTGCAGTGAATCCTCTTTCAAGTGTTTTTTGTTACAGTTTGAACATTTTACTGGTTAATGataatttacatattttaagTGTTGGTTTGTTGTGTATGATGCCACTTAGTCACCTGGATACTATATGCTCTTTTCATCAAGAATCACAATTGAAATATGAGTCTGTCTTTGTGGAAATTTGTTTTAATCATTGTTAACATCATGGGTGTGGTTTAATGTCCTCTGCTGTTAATAATTGTACAAGATTATCCATACATGTTTAGTGGTGCCTAGATTGTAAAGACTTTGTTGCTATGCTGATTATGAAATAAAGCTTTTAATATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151322 lncRNA downstream 1763 5720657 ~ 5721970 (-) True G112253
TU151313 lncRNA downstream 19159 5704296 ~ 5704574 (-) True G112245
TU151309 lncRNA downstream 25792 5697688 ~ 5697941 (-) True G112241
XR_005640670.1 lncRNA downstream 65371 5652999 ~ 5658362 (-) True LOC120568187
TU151273 lncRNA downstream 336982 5386550 ~ 5386751 (-) True G112212
TU151460 lncRNA upstream 28345 5774413 ~ 5791763 (-) True G112332
TU151484 lncRNA upstream 176679 5922747 ~ 5993773 (-) True G112352
TU151530 lncRNA upstream 336573 6082641 ~ 6105817 (-) False G112383
TU151529 lncRNA upstream 358731 6104799 ~ 6105817 (-) True G112383
TU151527 lncRNA upstream 367394 6113462 ~ 6116144 (-) True G112381
XM_039815113.1 mRNA downstream 5516 5705604 ~ 5718217 (-) True znf622
XM_039814557.1 mRNA downstream 24493 5684216 ~ 5699240 (-) True march11
XM_039816265.1 mRNA downstream 237072 5423991 ~ 5486661 (-) True basp1
XM_039816107.1 mRNA downstream 575032 5108041 ~ 5148701 (-) True LOC120568537
XM_039815923.1 mRNA downstream 675077 4906389 ~ 5048656 (-) False efr3a
XM_039815118.1 mRNA upstream 64258 5810326 ~ 5812362 (-) True LOC120567975
XM_039815115.1 mRNA upstream 96461 5842529 ~ 5868410 (-) False LOC120567973
XM_039815116.1 mRNA upstream 96461 5842529 ~ 5868384 (-) False LOC120567973
XM_039815114.1 mRNA upstream 96461 5842529 ~ 5852865 (-) True LOC120567973
XM_039816678.1 mRNA upstream 128384 5874452 ~ 5885417 (-) True LOC120568924
TU151299 other downstream 55046 5664004 ~ 5668687 (-) True G112233
TU151058 other downstream 1439650 4267538 ~ 4284083 (-) True G112046
TU151048 other downstream 1485063 4238102 ~ 4238670 (-) False G112043
TU151454 other upstream 47095 5793163 ~ 5852447 (-) True G112328
TU151456 other upstream 47095 5793163 ~ 5852447 (-) False G112328
XR_005640645.1 other upstream 428488 6174556 ~ 6175551 (-) False LOC120567959
unassigned_transcript_509 other upstream 454594 6200662 ~ 6200743 (-) True trnas-uga_1
unassigned_transcript_510 other upstream 459324 6205392 ~ 6205473 (-) True trnas-cga

Expression Profile