RNA id: TU151680


Basic Information

Item Value
RNA id TU151680
length 201
lncRNA type intronic
GC content 0.47
exon number 2
gene id G112499
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6430061 ~ 6434740 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgtgtgtgtgtgtgtgtgtgaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgttactgtgtgtgtgtgtgtgtgtgtggtattatgttactgtgtgtgtgtgtgtgtgtgtgtgttatactgtgtgtgtgtgtgtgtgtgtgttactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO:

id name namespace
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151667 lncRNA upstream 21032 6408540 ~ 6409029 (+) True G112487
TU151637 lncRNA upstream 69999 6359458 ~ 6360062 (+) True G112459
TU151632 lncRNA upstream 70798 6358069 ~ 6359263 (+) True G112457
TU151633 lncRNA upstream 70914 6358069 ~ 6359147 (+) False G112457
TU151634 lncRNA upstream 72082 6356125 ~ 6357979 (+) True G112458
TU151691 lncRNA downstream 38865 6473605 ~ 6473861 (+) True G112510
TU151692 lncRNA downstream 44972 6479712 ~ 6480914 (+) True G112511
TU151696 lncRNA downstream 96368 6531108 ~ 6531453 (+) True G112514
TU151697 lncRNA downstream 96368 6531108 ~ 6531453 (+) False G112514
TU151741 lncRNA downstream 183626 6618366 ~ 6618642 (+) True G112549
XM_039816381.1 mRNA upstream 78320 6302295 ~ 6351741 (+) True LOC120568706
XM_039816383.1 mRNA upstream 78320 6302295 ~ 6351741 (+) False LOC120568706
XM_039816382.1 mRNA upstream 78320 6302295 ~ 6351741 (+) False LOC120568706
XM_039816823.1 mRNA upstream 179399 6191772 ~ 6250662 (+) True LOC120569021
XM_039816609.1 mRNA upstream 324244 6084729 ~ 6105817 (+) True stard3nl
XM_039816134.1 mRNA downstream 140056 6574796 ~ 6682272 (+) True LOC120568552
XM_039816136.1 mRNA downstream 309990 6744730 ~ 6745611 (+) True LOC120568554
XM_039816139.1 mRNA downstream 437585 6872325 ~ 6873814 (+) True LOC120568557
XM_039815572.1 mRNA downstream 456247 6890987 ~ 6949130 (+) True LOC120568216
XM_039815571.1 mRNA downstream 456247 6890987 ~ 6949130 (+) False LOC120568216
TU151560 other upstream 108071 6251390 ~ 6321990 (+) True G112400
unassigned_transcript_536 other upstream 189158 6240822 ~ 6240903 (+) True trnas-uga_21
unassigned_transcript_535 other upstream 189799 6240181 ~ 6240262 (+) True trnas-cga_6
TU151409 other upstream 413461 6003685 ~ 6016600 (+) False LOC120568055
TU151330 other upstream 640769 5788356 ~ 5789292 (+) False LOC120568547
TU151740 other downstream 142667 6577407 ~ 6600380 (+) False LOC120568552
TU151756 other downstream 306361 6741101 ~ 6770912 (+) True G112562
TU151896 other downstream 572502 7007242 ~ 7009157 (+) True G112655
TU151912 other downstream 600287 7035027 ~ 7035700 (+) True G112670
XR_005640625.1 other downstream 1450758 7885498 ~ 7902287 (+) True dnai4

Expression Profile