RNA id: TU151734


Basic Information

Item Value
RNA id TU151734
length 2526
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G112545
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6684097 ~ 6688456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTATTATCTCGAGTGAAACTCACTCGCGTCCAGCGTATTACGGAAAAATAGAGATATATGATTATAGATTATATAAAAAGTCAAGGATTCACAGCTGGGAGAAGCAGATTGACGCGCGGTGCTTTGTTAtctgcatgttggtctcagatGTTGCAATCAGACGAATTAGAAGTCAAAGCTTGGAGGAGTTTTATTCCACAGCGAGAGTTCTGAAATCCAAACATCAACTTTGATTAGCTCTAAGTCTTGATTTCTCTCCAAAAAGTCATTCACCATTTGTgcccttaaagtgctcatattatgctccgTTTCAGGTTCATAagtgtatttagaggttgtgctgcacattgctgcagctcctcttttcaccctgtgtgttgagctctctgttttagctacagagtgagacctctcacttctgttccatctttgttgggagtcgcacatgtgcagtagctaggtaaggactactagccagtcagaaccagagtatgagggcgtgtcctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgtcctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccatgctagcagctaggcgagcattataacgtgtgttgtctctgaagtaaaggctggactacaatagagctgtttggagcagttggtgaacagtgttttctgttggagatggtaagtccctttgggggggactttttcactttgtaaacctataacgtgaaaaaaaacagatataTAACACGTGTTGCTGTGCAATTAactgtctcagaaataattgcgattaataatataattgtcaaatttaaaaaaaaaaaaaacttaatgtattacttttttcaaacaaaagtttagactcagattaatattctaagtgtctgacaacattatggaaaggatttctaatgagggtgacctttctgttaaagagtaagatcctttttttaaacataaaaacatccgtgaAATTGCATtccctaaacccaccagactccatgtaaataatcagtaattttagcatcgtaaaacacacttcattcaaagtcaacagaaactaaataaaactatgaaaggctgttttgggtcgtctttccactttttccagccatcacaactctacttttggttgaaataaacacatagtttactgatctACATGTGAAGATATGTTTGCTCTATAcgcgctaaaagtattgctttttaaatggagtctggtggatttaGCGCTaacgacttcagagctgtttctggttcaacagaaaggtctcaaagaggttttaaaggtctctctctgtagggatcctttccataatgttgtcagacacttagaatattaatctgagtctgtcagcggctaaacaagcacttttgtgaaggtaaacaCAAGCAGGACAACTggcctattaacttacattgtagcttgtttcaccgctgccgactgcagcgatctggcttaatactggaccgatgtcaaagattgttgttcccatcagtcacacagattagattcaactttattgtcattgtgcagagtacaagtacaaagaaatgcagtttgtgtccaaccagaagtgcaaaaagagcagaaaagtgcaatgtgatatacaagtatagacaggtatagacaggtggtgcatagagaggacaagaaatatagtgcagtgtagacagtagtgtacagttggtttacagaaggtggtttagagtaatataaattaaatataaatatgtgcagtgtattagcagttaccttatcAGAGCAGAATAACTATGGCTATGCAATAttaacaatgtatgaacaacactttgacacaaaaacaggaaaatagtttccaggttgaaaaaaaaacccagaagttaccctttaactggAGTTTGTGCCACTTTTCTAAAACCATTATGATTTTCCACTTTGGATCAGAACTCTTTACATATCACGTGTTTATTCATCAGGAAACAAAtcagatctttaaaatgtaagaaatAGGAATTAAGTTTAAAATTTTTCAAACTCTCCTTACTGGAATAAAACTAGTCGATTTGGAAAACAGACCAACAAGCAGCAACTGGAttatttttaggaaaaaaaTCAAGGTGAATCCTCACGAACAGCTTTGACGGCAGGTAGGAGAGCAGCCgcgacttttttatttttattttcggTTGTTGTAAATACCAGAGTCAGAAAGTCCTGCATATTTTTTACACGGACCGATCAATCAGGGCTCATACAGTGATGTCACGacaggaacaaaaaaaaaaaaaagactgaaaacaggaagcaggaagTGAAGGCGTTCCACCCAGAGGCCCCCTTTAAACCCGGCACAGAGCTGCGGAGGGGGTCAAAGGTCGCGGGAATACCAGAATGTTCTAGTTTCAACACGcgggaaagaggaagaaaaagaaaaatagagcactttcttcacagtttgtttcttttatcagcaaaatgtatgtCGTCCCCTCccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151741 lncRNA upstream 65455 6618366 ~ 6618642 (+) True G112549
TU151696 lncRNA upstream 152644 6531108 ~ 6531453 (+) True G112514
TU151697 lncRNA upstream 152644 6531108 ~ 6531453 (+) False G112514
TU151692 lncRNA upstream 203183 6479712 ~ 6480914 (+) True G112511
TU151691 lncRNA upstream 210236 6473605 ~ 6473861 (+) True G112510
TU151739 lncRNA downstream 6453 6694909 ~ 6698520 (+) True G112547
TU151757 lncRNA downstream 52645 6741101 ~ 6751474 (+) False G112562
TU151758 lncRNA downstream 52645 6741101 ~ 6751770 (+) False G112562
TU151761 lncRNA downstream 69148 6757604 ~ 6767081 (+) True G112563
TU151752 lncRNA downstream 110870 6799326 ~ 6804346 (+) True G112560
XM_039816134.1 mRNA upstream 1825 6574796 ~ 6682272 (+) True LOC120568552
XM_039816286.1 mRNA upstream 111751 6372433 ~ 6572346 (+) True LOC120568642
XM_039816381.1 mRNA upstream 332356 6302295 ~ 6351741 (+) True LOC120568706
XM_039816383.1 mRNA upstream 332356 6302295 ~ 6351741 (+) False LOC120568706
XM_039816382.1 mRNA upstream 332356 6302295 ~ 6351741 (+) False LOC120568706
XM_039816136.1 mRNA downstream 56274 6744730 ~ 6745611 (+) True LOC120568554
XM_039816139.1 mRNA downstream 183869 6872325 ~ 6873814 (+) True LOC120568557
XM_039815572.1 mRNA downstream 202531 6890987 ~ 6949130 (+) True LOC120568216
XM_039815571.1 mRNA downstream 202531 6890987 ~ 6949130 (+) False LOC120568216
XM_039816031.1 mRNA downstream 301045 6989501 ~ 7003033 (+) True rnf2
TU151740 other upstream 83717 6577407 ~ 6600380 (+) False LOC120568552
TU151560 other upstream 362107 6251390 ~ 6321990 (+) True G112400
unassigned_transcript_536 other upstream 443194 6240822 ~ 6240903 (+) True trnas-uga_21
unassigned_transcript_535 other upstream 443835 6240181 ~ 6240262 (+) True trnas-cga_6
TU151409 other upstream 667497 6003685 ~ 6016600 (+) False LOC120568055
TU151756 other downstream 52645 6741101 ~ 6770912 (+) True G112562
TU151896 other downstream 318786 7007242 ~ 7009157 (+) True G112655
TU151912 other downstream 346571 7035027 ~ 7035700 (+) True G112670
XR_005640625.1 other downstream 1197042 7885498 ~ 7902287 (+) True dnai4
TU152240 other downstream 1621394 8309850 ~ 8313076 (+) True G112932

Expression Profile