RNA id: TU151779


Basic Information

Item Value
RNA id TU151779
length 3468
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G112578
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6691784 ~ 6695501 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCATCAGCTCCGGTGCCAAATTCCACATCGCGTACTAATTGTATCCGGGACGTACTACCTATCAGTTGTCACGGTGACTGATTTCTAGGTTTAGATTACCAGAACATCAAGTTAACTCTTCCATTCAACAGGAAACGAATGCAACACACGAGCCAACAGACGAAAAACAAAGTTTTTCAAAGATTTTATACTTTTTCATCTTGATATATTTCTGTAGCTAGTAGTCCCAATTCTGTACTCCATACTACTATCTGAATCAAGTGTGTACTACACCCTTCTATTCTTATACTGCTTTTGCACTTACTACACAAAAAGTACACCcatttgaattgcattttaAATTGCAACTTTGTACTCCACCTGCCAATCAACCTTGTTAAGAAAGCAAAAAGTTTGACAAAATCTTGTAAATGggtttcatttcttttcttttgggaGATGTTCTTGGAGAGCCACCGTAGTAGCTCCTCCAAGTCCTTTCGTCAACTTCATTATTTCtataatttttaatttatcaTTGATTCTTTTCCCCATCTATTTCGTTTTATTATTACTAGTTTTGTCCGTTCAACACCCAAAAGATATCCGATTTACATCCAATCGAACAGAagagcagcaaatcctcacttTTGAGCAACGacaataacatatttttttggCCCAATTGTTTTATTTGATAATCACTTACCAAAATTGGTGCATGTTCATTTTCTTAAttacttattattttttgttccaGTGTAAAGTCACTGCAGACTCAGAGCTTGTGGTGTGACGTATTGGAACTGGGACATTTGTTGTAGAAATCTCCTTCTTTTTACCTGGGAAGGCTTTTATTGTGGAAAGTGTCCAGGAAGTGGTGAAGAGATTCCTTAAACGGCAGCCTAAAGCACAAATGCGcggccacgttcagccccgacaaaacgtaGCGTTTAGACAGAAACCGTCTTTTTATTAACCACGAGTTTACAGAGCCGTCTcggctgattgggtatcacctgggaCGCAGCCAAAAAAACGAGAGAAAACCTATCTCAAAGCTCGTTGCGCACCGCTCCGGGAAACCGTAGCGAAACGCTGCACACCGTTTAGAGATTGAACGTAGCCTCTTTTGCACACCGCTCCGAGGAAAATGCCGTTCAACCAGGAAACCGTAGCAACACGCTGCACACggttttgagattgaacgtaGCCCCGGGTGTTCTGTGTTCTGATTAATTGCAAAGCCGGTCCAAGGagagccgttccactccctatccagccccaaggtaccggattttggttgcagttccaccagaggtccactgggggtgatcacGGTCCAGTGCTGAATGAATGGGACCCTATGGAGCTAGactgctaaatgaatgggactctatggagctagacggctaaatgaatgggactctatggagctagatgctaaatgaatgggagtctatggagctagacggctaaatgaatgggactctatggagctagacggctaaatgaatgggagtctatggagctagacggctaaatgaatgggactctatggagctagatgctaaatgaatgggactctatggagctagatgctaaatgaatgggactctatggagctagatgctaaatgtgtctctttcacccgattgtcgttgagaaacctcagatttgattgtagtttttgcaagttcaacatgggttataggtcgaaagttgaataattgagtacttatgtccttttgatttcttacagggtgagtcgttgttgcccacaacacgctagcattctgctaatgaatgctgattggtcagtgaaggagtgattacgattggagatcccgcttgacggcatccgaagcagagcctgaatgtcagagtgaatatttcggtgtggtctttaaaacatcagcaaacttctttctagcacgtgtattaacagggagagactaacctatcagctgtgatgtattaacagggagagtctaaccattgacatatataaaatggaccaatagaccccgttgctctggacggagaccagtgaaggatattagaatcacttttccggtgatctcttgctttactgagcagcctccaactgagcttgaagacgtagatgtgacgtgagcaacctgtctgaaagtgtgaagtcttctggtagctgtgccgagagaaatctcaatcattcccaatcttacagagacggagagagcgtaggtatatgtaaggagataacatgggcacaggctaattgctgatcactaacatgctagttaacattagtcattaaacctaaacagctcatggaagtccaaactgcctgtgagcttctcctgtactatacggtaattcctctactgtgtgacagtaagtctcgtggtattaacagggagagccgaacctgttagctgtgttgtcgatgcctcgagagaacaaaggaagcgactcagagcttgccgtaaagcagtatctcaggccgtatatgtgtatgacgtcattaacattttaaaaggctttttagaacaaaaaagtgactttaaaaaaatctaacctccagcattgtgtatttttttagcctcccctttcgaatgcaacattcaaattactagacaaaaaattatatcctgagaaaagtggattttgaggggtatagctccatagagtcccattcattctgcactggcctgtgagcgccccctatatggatctctggtggaactgcaacctgttcagaagccggaagtaacgagggagtggcacttcttcctatattagaaattctttgttaattgtcaacaaatcccatgtcaGTCCGTCTCTTAGTGCCGTCTGACTTCCTGTTTGCAGCTCTCCGCTCCGAGCTTATCTGTTCCTACTAAAAGATCTCTAAAAACCCAAAACGTACAGTTTCTACATATGCAGCtggtcactgtagtttttaatCAAGCAAACAAGGAGGAAGTAGTGCATTTGTTTGGACTATTTTTTCCAACAgcagattaatccacatttggtgctctagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatggcgATGAAGGAACATGTGTTTTTAACAGCCACGCAGCTCTGTGacacagaggaggaagaagaagaagaatcagGTTTTGATACACAGCTAATACTTGTAAAATTGATCCATTGTTGTTCCAAAAACCAATGGGCCCACTATTAGAGAATTTACGGTAACTGTTGTTCCAGACTTTGAAGACATTTAGACTTCTTTCCTCACTCGTctcttgagtcttttctttggGAACTCATTTAAGTGTATCACTTTAAGATGTAACATGTTATTGTACAGTTTGGCCTCTCTGTTCTTCTCCAGCGTTTCCTGCAGCTtgggatttttctttttcctcccaTTTCTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151796 lncRNA downstream 9083 6681961 ~ 6682701 (-) True G112582
TU151801 lncRNA downstream 21058 6670445 ~ 6670726 (-) True G112587
TU151800 lncRNA downstream 22445 6669113 ~ 6669339 (-) True G112586
TU151799 lncRNA downstream 39971 6648850 ~ 6651813 (-) True G112585
TU151798 lncRNA downstream 67376 6624205 ~ 6624408 (-) True G112584
TU151791 lncRNA upstream 109 6695610 ~ 6698039 (-) False zmynd11
TU151792 lncRNA upstream 109 6695610 ~ 6698039 (-) False zmynd11
TU151804 lncRNA upstream 30910 6726411 ~ 6726767 (-) True G112590
TU151790 lncRNA upstream 36258 6731759 ~ 6869470 (-) False G112579
TU151788 lncRNA upstream 88444 6783945 ~ 6802154 (-) True G112579
XM_039816824.1 mRNA downstream 391813 6284160 ~ 6299971 (-) True gtpbp4
XM_039816825.1 mRNA downstream 408286 6256300 ~ 6283498 (-) True LOC120569024
XM_039816292.1 mRNA upstream 2047 6697548 ~ 6736512 (-) False zmynd11
XM_039816290.1 mRNA upstream 2047 6697548 ~ 6736512 (-) False zmynd11
XM_039816291.1 mRNA upstream 2047 6697548 ~ 6736512 (-) False zmynd11
XM_039816288.1 mRNA upstream 2047 6697548 ~ 6736512 (-) True zmynd11
XM_039816289.1 mRNA upstream 2047 6697548 ~ 6736167 (-) False zmynd11
unassigned_transcript_534 other downstream 464000 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 465038 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 470687 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 471250 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 471830 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1791966 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 2084951 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2176933 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2177909 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2196430 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile