RNA id: TU151788


Basic Information

Item Value
RNA id TU151788
length 1825
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G112579
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6731759 ~ 6869470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtcgaaaagttcaagggggccgaatactttcgcaaggcactgtatatattatctgtgagcCAAGAAAGAACGGGTCTAGTAGGTAATCGTTGCAATATCATGTTGAGTCAGGTTTTCCTGGACCTGTGTGCAGTGAGGTTAGAACTGTACGCAATTTGACTTGTGTATGTTAGATGAAGCAGTTAAATATTTATACAATTATGAAATATGTGTAAGACAAACAGTGCCATTCTTCTCTTCATGGTTAGCAGAATTCTAGACTTTACATTGAGGAAACAAGTTGCAACGCAGCCGTGGCACAGCCCTGTCGAAGACattatattgtgttttatgGTGGTTGATGGTAGTGAAAAATGAGAGATTAGCTACAAAGCAAAATCTTGAAATACTGTTGTGTTTGTAAGTTACTATATTAGCTTTATTTGCCACATACATTGCTGAAGAGACTGTTCTCCCAGTCGATTCATAAAATGCTCCGAAACACCTTGCGGTCAAGTGACAAAGCACTGTAGTGGTCTTATCAAATAATGATTCTTTTCCATCGGGAGCAAAGGAGGGAAAAGCAAACTGTAGGACATAAACATGGGAAACAGCTGTTTATTTCCCGTTTCCTACCACAAGTCAATGTTGGCTTCTTTTAAACCATCACCACGGTTGTTCCGTAATCCTTAGCCAAGTAgattttgtgcctaaacctgaACAAACCTTAAAGGTACACTGAGTTTCTGCAATGTTTCAGCACGAtttaatttttgtctcaaatcgtagacatctctccttgatccgctagctgcctgccccctgaatacactgtgaaaaagcccggtctccggagacaacacaggggtcgtaaacgtcaaacactaggggcacaggctgtgcaccaaaatacaacaaaccatgtTTGCAGCAGCTACTCTCAGATACAACTCACGCTATTCCCCCCATTATGTGTATGCGCACTAACCCCCTCCCTCAACCATCTTGTTTgatgtgattggctggaacgtggtttgttagggggcaggcagctaacGTAtaaaggagagatgcctacgatttgagacaaaaatgaaattgcgctgaaaccacgcaggaactcatagtgcacctttaactaTAGCGGTGTTAGTTTAGAGAACGATTGTATATGTTGAAACGTTGAGTTGTTTTGGAAGGCACTGACAAACAATGCCATCTTGCTGATAGTGGTGTCGTATGTCTAATGTAAATTTTATTAAGAGATGAGAAAAAAGGAACCGCTTGCTTTGTGCAGTGTGCTGTctaaatgttaatgttaattgtTGCCACAAGACAAGAAATTCTGGTGACACTTGACTTAAGGTTTACAGAATAAGGGTTTGTTTTGAGTAATCACATTTTCACACTACTGATTATTATCACTAAACGGTACTCCCTCCTGTTAATATCTTTGGTGAACAAAATACTAAAGCCCACTTACTGTCCTGAATAAGTGCCGTCATTTCTTTAGTTTGTACtatctttaatttttttgtatgtCCTTTTTAAATGAATTCAATACAGGACTCTAAACCAAACTTGCACTCATTAACTTATTAACATTAACTACAAGCCAGACCCCACTTTTGCCTTTGGACTAAATACACATCCAGATTAATTCTTTGTTGTCCAGAATTTGTTTGATGAAATCTAGGAAGCAAAATGAGGAAATCATACATGTTTTGCCAAAGTTGGTAAATGTAGGCCACATAGAGGCAGTTAACGGTCCTGGAAtctcctggttttaaagacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151795 lncRNA downstream 48965 6690670 ~ 6734980 (-) True G112581
TU151804 lncRNA downstream 57178 6726411 ~ 6726767 (-) True G112590
TU151791 lncRNA downstream 85906 6695610 ~ 6698039 (-) False zmynd11
TU151792 lncRNA downstream 85906 6695610 ~ 6698039 (-) False zmynd11
TU151778 lncRNA downstream 88444 6691784 ~ 6695501 (-) False G112578
TU151851 lncRNA upstream 72511 6874665 ~ 6949132 (-) False G112617
TU151852 lncRNA upstream 137961 6940115 ~ 6949132 (-) False G112617
TU151848 lncRNA upstream 142068 6944222 ~ 6949132 (-) False G112617
TU151849 lncRNA upstream 143051 6945205 ~ 6949132 (-) True G112617
TU151850 lncRNA upstream 143732 6945886 ~ 6949132 (-) False G112617
XM_039815265.1 mRNA downstream 8252 6773520 ~ 6775693 (-) True LOC120568072
XM_039815262.1 mRNA downstream 12549 6749460 ~ 6771396 (-) True LOC120568068
XM_039815264.1 mRNA downstream 15047 6765048 ~ 6768898 (-) True LOC120568070
XM_039815261.1 mRNA downstream 19895 6761022 ~ 6764050 (-) True LOC120568067
XM_039815266.1 mRNA downstream 23809 6757854 ~ 6760136 (-) True LOC120568073
XM_039816055.1 mRNA upstream 1754 6803908 ~ 6867658 (-) True LOC120568496
XM_039816056.1 mRNA upstream 1754 6803908 ~ 6814159 (-) False LOC120568496
XM_039816030.1 mRNA upstream 154286 6956440 ~ 6990122 (-) True si:ch211-267e7.3
XM_039816029.1 mRNA upstream 154286 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816028.1 mRNA upstream 154286 6956440 ~ 6988731 (-) False si:ch211-267e7.3
unassigned_transcript_534 other downstream 556161 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 557199 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 562848 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 563411 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 563991 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1685313 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1978298 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2070280 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2071256 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2089777 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile