RNA id: TU151790


Basic Information

Item Value
RNA id TU151790
length 1249
lncRNA type read_through
GC content 0.40
exon number 3
gene id G112579
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6731759 ~ 6869470 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggagggaaaaaaaacTGTAGGACATAAACATGGGAAACAGCTGTTTATTTCCCGTTTCCTACCACAAGTCAATGTTGGCTTCTTTTAAACCATCACCACGGTTGTTCCGTAATCCTTAGCCAAGTAgattttgtgcctaaacctgaACAAACCTTAAAGGTACACTGAGTTTCTGCAATGTTTCAGCACGAtttaatttttgtctcaaatcgtagacatctctccttgatccgctagctgcctgccccctgaatacactgtgaaaaagcccggtctccggagacaacacaggggtcgtaaacgtcaaacactaggggcacaggctgtgcaccaaaatacaacaaaccatgtTTGCAGCAGCTACTCTCAGATACAACTCACGCTATTCCCCCCATTATGTGTATGCGCACTAACCCCCTCCCTCAACCATCTTGTTTgatgtgattggctggaacgtggtttgttagggggcaggcagctaacGTAtaaaggagagatgcctacgatttgagacaaaaatgaaattgcgctgaaaccacgcaggaactcatagtgcacctttaactaTAGCGGTGTTAGTTTAGAGAACGATTGTATATGTTGAAACGTTGAGTTGTTTTGGAAGGCACTGACAAACAATGCCATCTTGCTGATAGTGGTGTCGTATGTCTAATGTAAATTTTATTAAGAGATGAGAAAAAAGGAACCGCTTGCTTTGTGCAGTGTGCTGTctaaatgttaatgttaattgtTGCCACAAGACAAGAAATTCTGGTGACACTTGACTTAAGGTTTACAGAATAAGGGTTTGTTTTGAGTAATCACATTTTCACACTACTGATTATTATCACTAAACGGTACTCCCTCCTGTTAATATCTTTGGTGAACAAAATACTAAAGCCCACTTACTGTCCTGAATAAGTGCCGTCATTTCTTTAGTTTGTACtatctttaatttttttgtatgtCCTTTTTAAATGAATTCAATACAGGACTCTAAACCAAACTTGCACTCATTAACTTATTAACATTAACTACAAGCCAGACCCCACTTTTGCCTTTGGACTAAATACACATCCAGATTAATTCTTTGTTGTCCAGAATTTGTTTGATGAAATCTAGGAAGCAAAATGAGGAAATCATACATGTTTTGCCAAAGTTGGTAAATGTAGGCCACATAGAGGCAGTTAACGGTCCTGGAAtctcctggttttaaagattacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151804 lncRNA downstream 4992 6726411 ~ 6726767 (-) True G112590
TU151791 lncRNA downstream 33720 6695610 ~ 6698039 (-) False zmynd11
TU151792 lncRNA downstream 33720 6695610 ~ 6698039 (-) False zmynd11
TU151778 lncRNA downstream 36258 6691784 ~ 6695501 (-) False G112578
TU151779 lncRNA downstream 36258 6691784 ~ 6695501 (-) False G112578
TU151851 lncRNA upstream 5195 6874665 ~ 6949132 (-) False G112617
TU151852 lncRNA upstream 70645 6940115 ~ 6949132 (-) False G112617
TU151848 lncRNA upstream 74752 6944222 ~ 6949132 (-) False G112617
TU151849 lncRNA upstream 75735 6945205 ~ 6949132 (-) True G112617
TU151850 lncRNA upstream 76416 6945886 ~ 6949132 (-) False G112617
XM_039816824.1 mRNA downstream 431788 6284160 ~ 6299971 (-) True gtpbp4
XM_039816825.1 mRNA downstream 448261 6256300 ~ 6283498 (-) True LOC120569024
XM_039816030.1 mRNA upstream 86970 6956440 ~ 6990122 (-) True si:ch211-267e7.3
XM_039816029.1 mRNA upstream 86970 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816028.1 mRNA upstream 86970 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816027.1 mRNA upstream 86970 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816778.1 mRNA upstream 138651 7008121 ~ 7015870 (-) True LOC120568998
unassigned_transcript_534 other downstream 503975 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 505013 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 510662 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 511225 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 511805 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1617997 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1910982 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2002964 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2003940 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2022461 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile