RNA id: XM_039816291.1


Basic Information

Item Value
RNA id XM_039816291.1
length 2921
RNA type mRNA
GC content 0.53
exon number 16
gene id zmynd11
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6695610 ~ 6736512 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTAGAGTTCTCCCGGTTCTCCCTCTGGTTCAGCAGCTCCGCTCGGCTCTGTTGGCGCTGTCTGTGTTTACCTCCCAGCCCAGCGCTGCTGTACAGTGGCCAGCTGGACACAAACAACCATCCTCAGCCTCACCTAGCCCGAACAATACTAATGTAAGCTGCCTCGCTTTTAATCCTTCGCGGATTTCCTGCAGCGCTGTGTGTACGTGACACCGTAGCAAAGTTGAGATGAATAAGGAGGTCATGTCACGCGTGGTGAAGAAGAGGCAGGCGGACCCCAAGGTGGTCCAGTATGTGTGGGCGGCCATCGAGGTCGTCCGCAACCAGAAACAAATTGCAAACATGGACAGGATCTCCAAGTACCTGAGCCGTGTGTTTGGCATGCACCCTAAGGAGACTGCCAGACAGCTGAGCTTGGCCGTGAAGGACGGCCTGGTGGTGGAGACCCTGACTGTCGGCTGCAAGGGCTCCAAGGCCGGCATCGAGCAGGAAGGCTACTGGCTGCCCGGGGACGAGATGGAGCCGAAAGCTGAGGGAAGCAAGGAGTGGGAGGCAGAGAGCCACGACTGGTACTGCTTCGAGTGTCACCTACCGGGCGACGTCCTCGCATGTGACAACTGCTTCCGGGTTTACCACCTCAAATGTCTTTCGGACGAGTTCAAGCCCAGAGACGGAGGATCTCACTGGCAGTGTGTCGCCTGCAGGGGCAGTAAAAAGAAGAACCTGAACAAACAGGAGATGAGTAAATACCTGCGCTTCATCGTCCAGCGTATGAAGGAGAGGGCAGTGGACCTGCACAAGAAAGGCAAAGACACTAAACATCCTATGTACAAAAGGCTGATCCACACTGCGCTGGAAGTCTCAAACATCCAGGAGaaccTGTCTGAAGGAAAGTATAAAAGCTTCGAGGAGTTCAAAGCAGACGCTCAGCTGATTGTTCACAACACTTCCATCTTGTATGGAGttcacAGCGACCAGGCGGAGATCGCACGGCTGCTCTTCAGCGACACATGCCATGAGTTAAATGAGTTGTTGTTGTGTAAGAACTGTTTCTACCTGTCGAACGCCCGGCCAGACAACTGGTTCTGTTACCCCTGCAGCCCCAACCACGACCTGGTGTGGGCCAAGATGAAAGGATTCGGCTACTGGCCGGCCAAAGTCCTTCAGAGGGATGAAAACCAGGTGGACGTACGCTTCTTTGGCCACCAGCACCAGAGAGCGTGGATCCCCTCGGACAACATCCAGGACATCAAGGTGAGTGTCCAGCAGCTGCAGGTGAAGCGCAGCAACGGCTGGAAGAAGGCGTGCGAGGAGCTTGAGGTCTACCAGCGCTTCCTGAGGGAGGGCCGCTTCTGGAAAACAAAGATGGAGGAAGGCACCATGCAGTCACACCAGCAACTGCagcagagccagagccagagccagagccagaaccagaaccagagccagaaccagaaccagagccagagccagccACAGTCACAGGAGGGCAGCGGGAGGACGGACAGGCTGGACCGGACAGACGAAGCAGAGTCCAGCATCTCCTCCACCAGCAACGAGCAGGTCCGACATcTCAAAAGCAGCCTGGAGCCCAAGGCCAAGAAAAGTCGTCGGACTCAAATAGTCGAACCCAAAGAAGAAGCCAGCGACCCGGAGCCCGAGATGGAGGCGGTCAGCTCCAGCCAGGAGATCCCCGTGTCCTCGGCGCCCCAGCAGCCCGAGAAGCTGTCGGTGTCCACGCAGACCAAGAAGGCCAGCGGCGGGTCGCCTCGCACGCTCCACCGCGGCACCCAGACCAACAGCGACGGCGCCTGCCAGAACATGTGCCACGAGAAGTACACCAAGGTCTTCAACGACGTCAAGGAGATGATGAAGGCCGACAACAAGCGGGAGACGGAGAGGGTCGTCCGAGAGGCTCTGGAGAAGCTCCGCacggagatggaggaggagaagcgCCAGGCGGTGAGTAAGGCGGTGGCCGGAGCTCAGACGGAGATGGAGCGGAAGTGTAAACAGGTGAAGGAGAAGTGTAAAGAGGAGCTGGTGGAGGAGGTGAAGAAGGTGGTGGGCCAACACAAACAGCTCATCTCCCAGACCAAGAAGAAGCAGTGGTGTTACAACTGCGAGGAGGAGGCCATGTACCACTGCTGCTGGAACACTTCGTACTGCTCCATCAAGTGTCAGCAGGAGCACTGGCACGCTGACCACAAACGGACCTGCCGCAGGAAGAGATGAACAAGCCCCGCCCCCCCTCCTTTCCCCACCCTGTCCCTTCTGAACTCACACAGCACGCCATTGGCTCTCGCCTTGTCCTCTTCCTGTCAGTCAGtgtctacaacacacacacacacacacacacacacacacacacacacacacacacaacacacaacacctcTCTCCTGCTTCTCTTATTGCCTTCCTGAAAACTTTGTGGACCCGATGTTTTCTGCGTGAAAAGAGCAATTTGTtcccttttttagtttttaaatttttctattatttaacattgtattgatttttatttttttttctttctatcttGTGTTCTGTCCCTCTGAATCGCGAACAGATTGCTCGAGAGCAATAGCTCGAATGCCGAGTCATGGTATGGATTTTTGGGTTGGTTTCTTattcagatttcttttttttgttgttgttttttctttctttactgAAGTGCTAATTTTTTGAGCTTGCCTCCGAGAATGTGTTATTTAAGTGCGTAGTAAACAGATGCGCGATTGACCGAGAACATTTTATTACCtgaatttttaaataaaatcactTTTCGTACTGTAAATGCAAACCAATACACACTGTCGATCTTACAAGAAAACTGAAAACGCACCGTAAGTCCTATCGCAGCATCCGAAGAGCTCCGCTTCCTTAGAGAAAACCTATttcgaagaaaaaaaattt

Function

GO:

id name namespace
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151778 lncRNA downstream 2047 6691784 ~ 6695501 (-) False G112578
TU151779 lncRNA downstream 2047 6691784 ~ 6695501 (-) False G112578
TU151780 lncRNA downstream 2047 6691784 ~ 6695501 (-) False G112578
TU151781 lncRNA downstream 2047 6691784 ~ 6695501 (-) True G112578
TU151796 lncRNA downstream 14847 6681961 ~ 6682701 (-) True G112582
TU151788 lncRNA upstream 47433 6783945 ~ 6802154 (-) True G112579
TU151851 lncRNA upstream 138153 6874665 ~ 6949132 (-) False G112617
TU151852 lncRNA upstream 203603 6940115 ~ 6949132 (-) False G112617
TU151848 lncRNA upstream 207710 6944222 ~ 6949132 (-) False G112617
TU151849 lncRNA upstream 208693 6945205 ~ 6949132 (-) True G112617
XM_039816824.1 mRNA downstream 397577 6284160 ~ 6299971 (-) True gtpbp4
XM_039816825.1 mRNA downstream 414050 6256300 ~ 6283498 (-) True LOC120569024
XM_039816135.1 mRNA upstream 2746 6739258 ~ 6740436 (-) True LOC120568553
XM_039815260.1 mRNA upstream 4586 6741098 ~ 6743701 (-) True LOC120568066
XM_039816138.1 mRNA upstream 10942 6747454 ~ 6748819 (-) True LOC120568556
XM_039815262.1 mRNA upstream 12948 6749460 ~ 6771396 (-) True LOC120568068
XM_039815263.1 mRNA upstream 12948 6749460 ~ 6751778 (-) True LOC120568069
unassigned_transcript_534 other downstream 469764 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 470802 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 476451 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 477014 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 477594 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1750955 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 2043940 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2135922 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2136898 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2155419 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile