RNA id: TU151796



Basic Information


Item Value
RNA id TU151796
length 741
lncRNA type inter_gene
GC content 0.57
exon number 1
gene id G112582
representative True

Chromosome Information


Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6681961 ~ 6682701 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


ACCCCACACGCAAATTTAAAAGCCAGAATCTTTGTTAACGATTGTCCGCTTCCGCCTCTCGGGACGCACGATTGCCACTGTATGCGGTAAACACGCTCGGCACTAATGGGAGAACTTGGTTGCTCtggatggggggggggtggctGCACTTCCTCTCAGGCCTGCTAATAGCGCCGCCTCCAAATTGAAACCACAGCCTGAacgctaaaaaataaaataaaatacaaaaacacttGATTCTGTGGAGCTAGTTGGCAGCAGCACATAGCCATGGgttggggggatggggggggtaAGCGCTGCCTGAGAAATTCAGGGCTGAAAAGCCAACAACCTTCGCGTGCCTCGCACTCCTGTTCAATTCTTTTCAGTCTCAGGAGCAGACGGTCTTGGCATTCCTTCATCCAACCTCCGTATCGGCCAGCTGGGGGGGGTGGGGAAGGGCGCTACATGTTGTAGGCCACGTAGATGGGGTCCAGCTGGTCGGCCAGGAAGCCGTCGCGCAGGTGCATGCGTTGCTTCTCGCCGCGGGAGTTGATGGGGATGACGCCGATGTCGACCACCACCACCACGCCCACGATCAGGTAGTGCTCCTCCAGGACCACGTTGGTGACCAGGGGGACCAGGTCCAGGGCCTCGTGCTCCGAGCCATCcagctccaccaccaccaccagcaggttGGTCCACGTGAACACGGCGCTGGAGGCACACGGGAAGAAACAACATGTCATTGCatcatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151801 lncRNA downstream 11235 6670445 ~ 6670726 (-) True G112587
TU151800 lncRNA downstream 12622 6669113 ~ 6669339 (-) True G112586
TU151799 lncRNA downstream 30148 6648850 ~ 6651813 (-) True G112585
TU151798 lncRNA downstream 57553 6624205 ~ 6624408 (-) True G112584
TU151776 lncRNA downstream 69655 6612062 ~ 6612306 (-) True G112577
TU151795 lncRNA upstream 7969 6690670 ~ 6734980 (-) True G112581
TU151778 lncRNA upstream 9083 6691784 ~ 6695501 (-) False G112578
TU151779 lncRNA upstream 9083 6691784 ~ 6695501 (-) False G112578
TU151780 lncRNA upstream 9083 6691784 ~ 6695501 (-) False G112578
TU151781 lncRNA upstream 9083 6691784 ~ 6695501 (-) True G112578
XM_039816824.1 mRNA downstream 381990 6284160 ~ 6299971 (-) True gtpbp4
XM_039816825.1 mRNA downstream 398463 6256300 ~ 6283498 (-) True LOC120569024
XM_039816292.1 mRNA upstream 14847 6697548 ~ 6736512 (-) False zmynd11
XM_039816290.1 mRNA upstream 14847 6697548 ~ 6736512 (-) False zmynd11
XM_039816291.1 mRNA upstream 14847 6697548 ~ 6736512 (-) False zmynd11
XM_039816288.1 mRNA upstream 14847 6697548 ~ 6736512 (-) True zmynd11
XM_039816289.1 mRNA upstream 14847 6697548 ~ 6736167 (-) False zmynd11
unassigned_transcript_534 other downstream 454177 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 455215 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 460864 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 461427 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 462007 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1804766 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 2097751 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 2189733 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 2190709 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 2209230 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile