RNA id: TU151848


Basic Information

Item Value
RNA id TU151848
length 3325
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G112617
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 6874665 ~ 6949132 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATGTTGTGATCAAGAAGGATTTTAatacacaagggttaaagacagAACAACTAACACCAGTCACACTGTGttaagacacacacagtgacccTTATTAGCTTAGCACTACTTCCACGGAAATAGTTGTTTCATATTGCTTATCTCCGGTCTTGTTTCTGCACAGCGTTCCTTCTTTTCGAAAGAAATACTGATGTGTGAGGTAACATCTACAGTGGGCGGTCAGAGATCTACAGCACGGTAACTCAGCTTTAGACACACAGCAACAATGTTCATGCACAAAACTGGTGTTTAAACATTAATACATAGTTGAATGATATTACATCATAAGGCTTGTAGGGAAAATGTGGTGAAATAGAGCCGCGAAGTTCCTCCCTCTTCGGGTGGACCTCAAGGGACCTTATTTCGGAAAAAAATATGCTCAGTAGTGAACGgagagagaattttttttttatcctgtttaaattgagccatgaattacacataggATGTTCGTCccttttaaaaaattatttgggaactgaagaaagtctcagtttgccTTAGTACCACTTAATTtcgtgtgaaaccgctcagtgaactacatatTGTATTTCATCTTGCACAATTTACGTCACCTTGCTTGGTGCTctgcttgctcgctagctagctagctagcttagctctgttccacaacacgtAAAGTTATGTCACCTGATGTGTTTGATCGGCCGAGAAGCGAAAGAACGTGCAAGATCCGTAGCTCGcgtgagtaacgttacatcatCCCGGTACTAAACACCGGCATCGCAGTTTCAGAGAGACGTCACTTACGCGACTTTGGGGTGTGTAGTCTTTCCAATTACGTGTtctcacagtcttatacttcagcAGCTTAACGACAAACTAGACTTTTCTTGACTTgctaaattatcttttaaaattgacaaaacgtgtgtaattcatggctcaattcaacggaataaagaaaaaaaatatttgactcCTCGTTCACTAACTGTACGTAATCTCAAAAACGGCGTGCACCGTGTTACCACGGTTTCCTGGTTAAGCGACATGTTTCCTCGGAACGGCTTAGCGGTACGTTTTCTCTCGTTCGGTGGGCGTGTCTCTCGTTTATTGAGTGagacccaatcagcagagacgggCCTTTAAACTCTGAATAAAAAGGCGCAGCGCTTGCAAACACAACAGGGTGTTTAACGCACCCCCGTTTTAGTTTTAAATTAAACGCgttgctacgttttgtcggggctgaGGGTGGCTGCACcagaaggggcgggacttcgcctctctatGGGGAACAGCTGGAAGACAGGTTACAGGAGTACAGCCAGGAGGTAGGATCCCAGGGGAATATGCACAGTGACCGgttgttcagttcagttttctTGCTACATTAAATAAAAGCTCCTGCTCAGGCAGCAAAAGAAGTGCGTCAGCCCTTTTTGTTAAACTACTGGCTGCAGGCTCAAAATGGGAGTTGGCTGAAACTGAGGATGaggtttcttttttgttttattgtcctgTTTACGAGgacttaaaggagaaatccggccGATTTTTACCTGAATCTTGATCGCTAGATGTCTCCCGAGTACTGTCGACCAAAATCGGTGCAAGCAAACTGGAGTACAAACTTTGAATTCAAACGGTTTCTTcccaatgtctgagttgaaaacgcatcttgttgtcacgtaagggccctgttcgtgGTGCACAGAAATTTTAAatttcattttgtgtctgttaagaggcgcaaaggcactctttagaacatgcccccacaactggcattttagctaactgggagctctggccattagctgcagctactccagtttgctagcacTGATTTTGgtcgttttttttcccctatcgacagtactcgcAGACATCTAGCGATCAAGATTCAGCTAAAAATCggccggagttctcctttaagggaTGTAGTTTTTACTAAAATGAACTTCTATTTATGATTTATGCTGATTTCTTCGGGCTTTatgattatgaaaaaaatctgagCTTGGGAAAGAAGATTTTGTTTAACAACGAGCTGTAAATTAACGTGTGCTTTTGTGAAATTGAATGAAACGGTTGAACGCTGCAACTGACATTTTTGGGGTCTCGTGAACCCCCCCTGAGGGGTTGGGCACTTTGTGTGCAAGACACGGAAATAAAAGACAAATCATCAACCATCATTTACAGACTAAGGGTGCAAACACACAGGGAGTGGCGAGATGTGAGCTCCGGTTTATGTTCAGTGAGAGGCAGTTAGAGGCCTCTAAAGGCTcggacacaccaacccgacaccaaaaaagtgcctcggaccGTACCGAAGCGACGCCAACTTGAGCGTACCTTCTGctcgtgcgcgagacgtaacgCATGTCTATAACAGTAGGCGGctctaatctgtattgtcgcccaaaaaaaaaCCCCGGAAATGACGGAACATTTCTCTAGACCTCGTAAACGCACGAGCACGCGGTCGTCGTTTTCATCAGAGAGGgttgatagtagtcaagaaggatcgttgttgtcattactcgccGAACGGAAGAAAATACGACGGCTAGCAGTGagaagatactggcgttgtcGGCTCTCGGGCTTCTCCTCGTGTCAAGGGctagcgctccaccaatcagattggccgattcaacaagtcaaaatcggccaaaatgaaggccaacggctcctccgactgacgacggcacggaccACATCGAACAGACTCGGGTCACCGATCTCGCCAcatccgacggccgataatggGGTTGGTGCGTCAGAGCCTTAACTATCCTCATTGTTAAAGTTCATGTGAATGCACTGAAAACTGTGGCAGTAAGTCCAGGTGGGAAATCTAAACAAAATTAACCTTTAAAGCAAGGCAAGCTCTGCGTCTGAAAGTAAAGTAAGACTGCATCACATCAGAGGGGTAGGGGAGAGGGGCATTTAGAGATCATAGAGGACCTCCAGCACGGTGGCCAGAGACCAGGCCTGGGTCTCACAGCTGAACGGGCAGTACTGGCCATTCTCATTGGTCAGCTCTGGCAGACCCTTCCACGGAGACCTGGAGACAGAACATTTTTCACCAGCGTGACCGTTTTAGCGTACACTTCTTCTCCCAGCTTCTTGGCAAAGTAGAGTTTAGCACGCAGGAAGTAGCCCACCGGCCACAGccactcctacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagaaacagacacagacacacacacacacacacacacagacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151790 lncRNA downstream 74752 6731759 ~ 6869470 (-) False G112579
TU151788 lncRNA downstream 142068 6783945 ~ 6802154 (-) True G112579
TU151804 lncRNA downstream 217455 6726411 ~ 6726767 (-) True G112590
TU151791 lncRNA downstream 246183 6695610 ~ 6698039 (-) False zmynd11
TU151792 lncRNA downstream 246183 6695610 ~ 6698039 (-) False zmynd11
TU151882 lncRNA upstream 40099 6989231 ~ 6990005 (-) False si:ch211-267e7.3
TU151885 lncRNA upstream 45926 6995058 ~ 6998925 (-) True G112648
TU151893 lncRNA upstream 55032 7004164 ~ 7005382 (-) True G112652
TU151895 lncRNA upstream 57540 7006672 ~ 7006980 (-) True G112654
TU151928 lncRNA upstream 109315 7058447 ~ 7058835 (-) True G112683
XM_039816055.1 mRNA downstream 76564 6803908 ~ 6867658 (-) True LOC120568496
XM_039816056.1 mRNA downstream 130063 6803908 ~ 6814159 (-) False LOC120568496
XM_039815265.1 mRNA downstream 168529 6773520 ~ 6775693 (-) True LOC120568072
XM_039815264.1 mRNA downstream 175324 6765048 ~ 6768898 (-) True LOC120568070
XM_039815261.1 mRNA downstream 180172 6761022 ~ 6764050 (-) True LOC120568067
XM_039816030.1 mRNA upstream 7308 6956440 ~ 6990122 (-) True si:ch211-267e7.3
XM_039816029.1 mRNA upstream 7308 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816028.1 mRNA upstream 7308 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816027.1 mRNA upstream 7308 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816778.1 mRNA upstream 58989 7008121 ~ 7015870 (-) True LOC120568998
unassigned_transcript_534 other downstream 716438 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 717476 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 723125 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 723688 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 724268 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1538335 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1831320 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 1923302 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 1924278 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 1942799 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile