RNA id: TU151928


Basic Information

Item Value
RNA id TU151928
length 389
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G112683
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7058447 ~ 7058835 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tactagccagtcagaagcagagtatgagggcgtgccctgacagtagctaggtaaggactactagccagtcagaagcggagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcggagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccatgctagcagctaggcgagcattataacatcggtctctgaagtaaaggctggactacagtagagctgtttggagcagttggtgaacagtgttttctgttggagatggtaagtccctttggggggggactttgggctttttcactttgtaaacctataacgtgcacaaaaaagatatata

Function

GO:

id name namespace
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151895 lncRNA downstream 51467 7006672 ~ 7006980 (-) True G112654
TU151893 lncRNA downstream 53065 7004164 ~ 7005382 (-) True G112652
TU151885 lncRNA downstream 59522 6995058 ~ 6998925 (-) True G112648
TU151882 lncRNA downstream 68442 6989231 ~ 6990005 (-) False si:ch211-267e7.3
TU151849 lncRNA downstream 109315 6945205 ~ 6949132 (-) True G112617
TU151929 lncRNA upstream 18178 7077013 ~ 7079543 (-) False cdh6
TU151970 lncRNA upstream 550065 7608900 ~ 7610234 (-) True G112716
TU151996 lncRNA upstream 651775 7710610 ~ 7734376 (-) True G112738
TU152025 lncRNA upstream 743505 7802340 ~ 7802552 (-) True G112764
TU152042 lncRNA upstream 796837 7855672 ~ 7855889 (-) True G112778
XM_039816667.1 mRNA downstream 13909 7030085 ~ 7044538 (-) True c11h5orf22
XM_039816767.1 mRNA downstream 29779 7018394 ~ 7028668 (-) True LOC120568987
XM_039816778.1 mRNA downstream 42577 7008121 ~ 7015870 (-) True LOC120568998
XM_039816030.1 mRNA downstream 68325 6956440 ~ 6990122 (-) True si:ch211-267e7.3
XM_039816029.1 mRNA downstream 69716 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816555.1 mRNA upstream 17774 7076609 ~ 7163670 (-) True cdh6
XM_039816754.1 mRNA upstream 171966 7230801 ~ 7232421 (-) True LOC120568977
XM_039814723.1 mRNA upstream 563279 7622114 ~ 7624108 (-) True LOC120567743
XM_039816538.1 mRNA upstream 682849 7741684 ~ 7767836 (-) False paxip1
XM_039816537.1 mRNA upstream 682849 7741684 ~ 7767836 (-) True paxip1
unassigned_transcript_534 other downstream 830663 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 831701 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 837350 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 837913 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 838493 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1428632 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1721617 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 1813599 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 1814575 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 1833096 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile