RNA id: TU151929


Basic Information

Item Value
RNA id TU151929
length 2511
lncRNA type sense_over
GC content 0.41
exon number 2
gene id cdh6
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7076609 ~ 7163670 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtattttCATTGAGAATATGCTTGATATTTCCATGAAGGACATGGAGAAGCCTTGGTTTCCCAGTAGAGCTGTAGATACTGTTTGAGTGTAAATGAACTTACCAAACTGTGCATCAAGCCATTTGTAAGGCaaatatttgggttttggttaAATACTACAGCttcactaatcaatatttttgtaataaaaatggATCAAATAATTACATGTAATGTGAAAGGGTTCGAGTGTGGTGACAGGCCTCCAGGTAATTACTCTACGGAGtgttcagctcattgttttgggtTTTGATTGAGTCTCGCTGCGCTCATTGATCTCATTTTCCAGCAGGGAACTGGTAAACGTAGCGAAGCATTTATCAGCTGAAAAAAGACAGATACTTTATTtttggagttggtggagaccaaaccagagctaaaaggagcGAGAATATTAGACTAGGGATGTCACGATATATATCGATGTACGATACTCAATACCAAAGTCGATACCAACGTGtgtaaaggaaaaaagaaaagaaaaagaacgaTAACAACTCCCAGACAGCAAGCACGTTTAGTtaagtctgtttctctctgccgttgttTTTTCACATAGAACCGAGCAGGTTAAAGTTAACTTAACTGACGCTATAGAGGTCCGCTAAAACCAgcgctaaagttagctaatgtcagctatcggagctaacgttaggctgcgacagagaaacagactttACTTTTGGTCTGCAAGCTCCAGGTGAAGTCGTGAAAGCCGTTGCTGTAGAGGTTGTGTTACAGTAAAGCCAGAGGCTGACTGCGGTCAAGCCGCCGAACACAACGACGGAGATGAGGCGCGattctgtttttctgtgctggtcgcctttcttcttcttttccaaCAACAGTTTACACTTTAGGGCGTATATTTTGGCCCCGTCAGGTTCTGGAAGAAATGCATCCCCCGGTACCTACGGTACTGTAGAAAAACGAGTACCGTCACGTTTTCAGAATTTTGGTACCGACTCGGTACCGAGGTACCGGGTCTCCCGACATCCTATATTAGACTTACATCTGTCAGGTGAACACAAGCATAACACCAAaagaatgctaatgttgctccctATCTGCTGGACGTCACCAACTGTTTACCCACACATTAGCCATAACAAAGAATAATGTGATAATATTTCAaagttttataaaataaatagtttaacattttgggaataTTGGTCAAGAGTTAGATgtgaagattgataccactctcgtgTCTGTACGGTAAATAAGCTCCCGCAAATAGCTGCTTAGCTTatgttagcttagtttagcattaagactgaaaaggaggaaacagctagcgttagcatggcTCTTTCCAAAGTTAACTAAAttcacctaccagcacctctaaagctcaccagGCATCATCCTTTGTTCAATACagaaaccaaagtgtaaaaccAAACAGattaggcttttattttttatttattgtctgGGTGTAGTAACTTCTTAGAGTCTTCCCTGGTTGCCTGGCAAACCGCATGTTGACGACAAGACtgccaagtggccaaaaaaaaaaaagcaataaatgcCGGTTTAGAGCAAATTAATTAGCAAAACGTGCTAAGCAGATTATCTTGACACCAAACAAATTGGAGAAGCAACGTGCCAAAGCATTTTGGATTCAACACTGTAGATTGATTCTAAAATTGTGGGTAAAAATGACATAAGCCTGTTTGACGCAACTGTCTTACACTAGCTTTTTCACAACAGGAAATCCCCAAATGATCACCTGTTAGTGTCACTTTAGACGCAGCAGAGGCACCACGGATGAACAGGACAACGTCAGAAACAATGTACCGTGAGTTTAGGATTTTGCTCAGTTGCTTacgttcaaataaaaaaatagatacttttatttatttttttgcattttaggcctttagcGGGGGAATGACGTGCATTTGGGttgcgcgctctaccaggtgagctactcaGGCGCCCCAAATTAATTTGAACAAATTGTGTGTTGGGGCTCATTCGTTCAAACAGCCCTACTTCACAGCCAGCATTGCAGCTCGAATGTCTTTCAGCGACTGGGAACCTCATTTatagctattattattattattattattattatgttattTCCTGCTCGTACTTGTTTTCTCCCATGCTCTCGCATTGTTTGAGGATATGGTGACGAAGGTATCACGGCACAGATTTCCCTCGCTGCTTTGTCTGAGAAaacgagaaaaaaaataaacagcgtATTATTTAACGGCTTTATTGGCTACGTTATATTCAGCCCGCCCTTGTGTCTCGTTCAAAGACATCACGAGAGACATTTTTCTTGTTCAATGTTGTAAATTAGCCGACACCGGAAGGCGGCGTAGTCTAGTCATCGTTTGGCTTTGATGTCACAGAAGTCACTGAAGCAAAAGGGTCACAACCACAACAGTCAACCTCAGCGCTGTGTTTAAATATAACACATTTCAAGTGAGGGACGAAACTATGAAGTCGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151928 lncRNA downstream 18178 7058447 ~ 7058835 (-) True G112683
TU151895 lncRNA downstream 70033 7006672 ~ 7006980 (-) True G112654
TU151893 lncRNA downstream 71631 7004164 ~ 7005382 (-) True G112652
TU151885 lncRNA downstream 78088 6995058 ~ 6998925 (-) True G112648
TU151882 lncRNA downstream 87008 6989231 ~ 6990005 (-) False si:ch211-267e7.3
TU151970 lncRNA upstream 529357 7608900 ~ 7610234 (-) True G112716
TU151996 lncRNA upstream 631067 7710610 ~ 7734376 (-) True G112738
TU152025 lncRNA upstream 722797 7802340 ~ 7802552 (-) True G112764
TU152042 lncRNA upstream 776129 7855672 ~ 7855889 (-) True G112778
TU152043 lncRNA upstream 778307 7857850 ~ 7858075 (-) True G112779
XM_039816667.1 mRNA downstream 32475 7030085 ~ 7044538 (-) True c11h5orf22
XM_039816767.1 mRNA downstream 48345 7018394 ~ 7028668 (-) True LOC120568987
XM_039816778.1 mRNA downstream 61143 7008121 ~ 7015870 (-) True LOC120568998
XM_039816028.1 mRNA downstream 88282 6956440 ~ 6988731 (-) False si:ch211-267e7.3
XM_039816754.1 mRNA upstream 151258 7230801 ~ 7232421 (-) True LOC120568977
XM_039814723.1 mRNA upstream 542571 7622114 ~ 7624108 (-) True LOC120567743
XM_039816538.1 mRNA upstream 662141 7741684 ~ 7767836 (-) False paxip1
XM_039816537.1 mRNA upstream 662141 7741684 ~ 7767836 (-) True paxip1
XM_039816718.1 mRNA upstream 738204 7817747 ~ 7836946 (-) False cnpy1
unassigned_transcript_534 other downstream 849229 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 850267 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 855916 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 856479 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 857059 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 1407924 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1700909 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 1792891 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 1793867 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 1812388 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile