RNA id: TU151996


Basic Information

Item Value
RNA id TU151996
length 2394
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G112738
representative True

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7710610 ~ 7734376 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATTATCAGTTCTCCAAACTCACAGGAAGCTCAAGTGTTTGACAGCCAACAGCTTACAGAACCGAGGGGAACACAGTTATTTACAGCTGTAAACTCAACAGGTTTCAGACTGACAGAGAACGTGTTAAAGGCATGCAAAGGGTTCAGACAACAAGGAAATAAATCCAACCACTTGCATACAAGTTGGAGGCTGATATTAAACTGTGCCTTTATTAGGTTTGAATAATAcacattcaaaatgttttttttttttgtatacacaGAACACAGTAAATGGTCCGTACAGTGTGTTTCAAATCACAGTTTTCGAACTCAAACACATTTCTGACgtacagaaaagaaaaatctgtGAAAGAGCGGGATGTCATTTTAGGAAATATAATGGCAGTCTTAACCCAGAGTCTGACGAGAAGATGAATCAATCAGTCCATCTCAATGTGTTTCTCTCTCCGGGATGCGTTTACTGTCACCTGTAAGCCCAGCTTCATCAAAACAGCCACAACTGTCTTACTTTTTTGATTCTTGGACACAAAAatagaataaagaaaaaagaaaaagccgtGCATTTCAGTAGCAGTAGCGTCGGACCTGTTTCCCTGCAGTCAtacgttttagtttttatttacaaTAGATGCAGTTGGTATGCAGAAGTCAGTATAGGTTTTTTCcctaacataaaaacatctacaACGTCTCATCTTCCCTCTACTCACCAGGGTTATCTCATTCTGTTTCTATgccaattttgtttttttttaatgaatatcGTCACTGTCTGGTGAAAACCTTGGATGTCCAAAGCAATACTTttttaggaaatgaaaataaaatgctaaCTTGAAAACATTTATTGAGCTATTCGGGTCAGACAAAGGCAGACAGaaactgtttaaatatttgtaagaCAGGCGTAAAGGGTGACCAACAGCATTgattcattctttttattttttattttatttgactaAATAACGAGATACAAGGTTAGCGACGATATGTAAACCGGAGGCGAGACATTTGGTGAAAATTGGTGATAAATTGCAGGTGAAAAACCATTGGAGGATTATATTCACTGGGAATGGTTTTCTCTCCGGTGAACAAAGAgctgttctttatttttatttttttactttgacacCAGAGGTGGGTCATGTCCTGGGGTCCTGGGAGAAAAGCattggtttttttttcattaggcCTCCACAACAGATACCTGTAGTGCTACTTTTTTTTAGGTTCAGGGACGGCACTGCGTAGCATTTGTCTGCGTTAACAGCTCCTCCTAGTCCCACACCAAACCCAAGGGGACCGTGCTTTCTCCGTGTCTGCTCCCAGGCTTCGGAACAGCCTCCGGTCCCATATTAAAGCATGTTCTACcacccttttttccccccccactTACTTTTAGCAACGTCTGAGGCTGCCTGGCTTCTGTCAAGCTACCTCCTGATCTGTCTTTCTATTCCCTATACTGCTTCAAAAGCCATTGCTGATGTAATTCACTCTTCTGACGTGCTTCTTTGTTGACGTTGTTTTACGCTgcaatttgttttgtattacattttgtggCGTTTTGTTGGTTATGTACGTCTAATTAGCCTGCTGTTAGTTGTCTATGTGTCCAGGCATACTCTACCCCATCTGCCCTGGTTCTGGTTGGAAAGCACTTTTGGGTCAGCTTAtgctgttttaaatgtgctttataaataaagatgacttgacttgactttttgGGGATGTTGGAATGggtattttttcactttttaaagggACCTAAGCTAGCAGTTTGTCAGATTCTAGCAGATTGTAAGCTTGGTTAAAGATGCCCGGAACATTCCTCTTTACTGGTATATTCATCTTCTCATCTGACTCGGACTTGCGGATTTGTTCCTTTATCCTTGATGGATTTAGCCTCACAGACAGTAAAGCTGTCTGTCATAATGAACTTACTCGAAAAAGACTTCAAAAACTTCAAGCAACTCACTACAAATGGAAAGGGCTCTGCATATGCACAATAAACAACAGCTATGTTCAAAGAAGCTATATATGTCTAATATGCCTGTATATGTTGCTATATTATACTTCATACTACTATACATAAAAAGTCTACACGGATAGATTTGAACTTTACAGAATGTATCTTTAAACAGGTTAGTCTGTACAGAACTGTCTTTGGGTAAACTCTGCATATTAATCATCCCAACCTCTACTTTCCACAGAAATTTATTCAACAGTGTTAAATGAaagcacacatactgtatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151970 lncRNA downstream 100376 7608900 ~ 7610234 (-) True G112716
TU151929 lncRNA downstream 631067 7077013 ~ 7079543 (-) False cdh6
TU151928 lncRNA downstream 651775 7058447 ~ 7058835 (-) True G112683
TU151895 lncRNA downstream 703630 7006672 ~ 7006980 (-) True G112654
TU151893 lncRNA downstream 705228 7004164 ~ 7005382 (-) True G112652
TU152025 lncRNA upstream 67964 7802340 ~ 7802552 (-) True G112764
TU152042 lncRNA upstream 121296 7855672 ~ 7855889 (-) True G112778
TU152043 lncRNA upstream 123474 7857850 ~ 7858075 (-) True G112779
TU152151 lncRNA upstream 167204 7901580 ~ 7903761 (-) False G112871
TU152152 lncRNA upstream 167204 7901580 ~ 7903890 (-) True G112871
XM_039814723.1 mRNA downstream 86502 7622114 ~ 7624108 (-) True LOC120567743
XM_039816754.1 mRNA downstream 478189 7230801 ~ 7232421 (-) True LOC120568977
XM_039816555.1 mRNA downstream 546940 7076609 ~ 7163670 (-) True cdh6
XM_039816667.1 mRNA downstream 666072 7030085 ~ 7044538 (-) True c11h5orf22
XM_039816767.1 mRNA downstream 681942 7018394 ~ 7028668 (-) True LOC120568987
XM_039816538.1 mRNA upstream 7308 7741684 ~ 7767836 (-) False paxip1
XM_039816537.1 mRNA upstream 7308 7741684 ~ 7767836 (-) True paxip1
XM_039816718.1 mRNA upstream 83371 7817747 ~ 7836946 (-) False cnpy1
XM_039816716.1 mRNA upstream 83371 7817747 ~ 7836807 (-) True cnpy1
XM_039816719.1 mRNA upstream 83371 7817747 ~ 7836375 (-) False cnpy1
unassigned_transcript_534 other downstream 1482826 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1483864 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1489513 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1490076 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1490656 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 753091 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 1046076 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 1138058 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 1139034 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 1157555 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile