RNA id: TU152151


Basic Information

Item Value
RNA id TU152151
length 2182
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G112871
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 7901580 ~ 7903890 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAATACTTTCTGTGAGCAGTAGAAGTCATGATGTGGTTTCAGGAGTTTGttgttttaactttattttttttttttcttctcgttTGTTCTCTAGCTAACTTTAcctccgtgtgtttgtgttctgtaGATTCCTAgctggttttttttcttctccatttTCAGATATGATTCCCTAGATCATCTGACTAGACTATCTTAAAGTTTAATATGAAGTTCTAACTTTAAACTTCAGCTCTAAGTTTTAAACTGTGATGTGAATGAGGACATCATGGACGGTGCAAAGCTGTCACACTGTGGTgtaaagattcttttttttttttttttaaatccatcagCTATCCATGGATCTGGCTGTCAGGCTGATTCCACTTTAGCTTCAGTGTAAAAGAGGAGTTATCTGTGGCTCCCGGAGGGTTGAACAGATCCTGTGGAAGTCGGCCATAACTAGCTGACTGCCAACCAGTTCAGTGAACAAGATCTGTGGTCTCTATCATCGGTTGGCgtgtgttttattccaaaaGGGAGACTTTCTTTAGTCACtgttccttttttccttttgtgaAATCAGAATCTGTcttggtgtgtttttctttttttgttttttaatcattgaTCCATGGTAGCAGGGCCCCTGCAAGGCCAAACATCATCTTACAAACCATTCCATCACATAACTCAAGTTTAAGGATTAAGAAGGCCTATTGAGAGCTTCATGGATTTAGTTTGGAGCCTGCAGGTGAACATCCTTTTGATAGAACTGTGACACTACGGGCGTTCTCACACCTACAGTTGGTTTGCTCTGGTCCGACTCGGTTGAGGAGTTTGTAAACCTGGAGCGTTTCCCCTTTTTGGTTCGGTTTCATTTCGCACCGAGAAAACCCGTGCGAGAACGTTTTACTCAGCCTGTGTgtctgggggggagggggcgcgggagcaagaaagtaaatgcaggaagaaggtcctgtgttctggactaggGCACATCTCCATTAAAATAGGTTCTTTCGCCAGCAACTTTACTGCATCTGCTCCGGTCACTGAGACTTCGTTCTGCTCCGCCGCCGGCTGTCTCCAACTTCAGCGCCGTTTAGTTTGACCACTGAGATGCGAGTGACGTGACGCCGAGCTTTAGCCTGGTCCtgccagactctggtccaccagactctggtccactagcctggtcctaccagactgtgGTCCACTAGGTGGTAGTAGTAAATGCTCCATGGTTCGATTCCACCAAACTAAACaaggtgtgaaaatgccctACAGTAGTTTTAGGACAATGggtgcagcactgtggagaacTCATTTCTGTTGTGATACTGACAATAAACAATATGTAGATCTGATGATTTAAGATGAATTACAACACTACTCTCAGTGGAAGAAGAGAGACCAAGTAAAACAtacagttatttttatttttttaattctatcTTTTGGGTGTCCTAGTCCCATTTTGTGTTTCTAGTCCTggcatattgtttttttttttttatggtgtgCAGTAGTCGTTTTCGTAGGATGTCTTGTCCACTAGCTGGTCTTTTCTACTCCCTCACATTTTGTAAATCAGTGTGAAATCAAAAACCTTTTTACCAGTTGAAGATTACAGTCTTTACCAAGAGAGAGCTTCTAGATTTTTAAAaggaacatttttaaaaaggacttggagaaataattaaaaaaaatatatataattttctgAAAATGCTTTAAAAGGTTTTTACAAAGCCATAAGCGGTTTGTGACAGGCATGTTTTAAGGGACTGGGCTACTTCAGGAAAACTTTTTATTCTCCAACGAAACAATAGGGAAgggcaataaaataaaactgcagaGCCACCTGGTGAAATGCGTCTTTTTCATTACGGATCATTGATCAGAAGTCGTGGTCACGCTGGAAAGGCTTGTGCTCACGTGGACAGCTTTGCTCCCACACACTGGGGGTGTCAGTTGCTGGAAACGGTTTAATTACTGTGCAGGGGAAATAAAGCTGCTGGTTAAAGACTGGCCATCTCTTTGCCTCGGTGTTGTCTGCAGATCTAATACGGTCCTGTAGATGCTGAGGATGACGATGTAAATTATTGTGAAGTAACGATGGATTGTGGAGATTTGAAGTGTCACGGTTTTCTGTAAATGATCTGTTGCTGCAATAAAAGGTTTGGGACAACAGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152043 lncRNA downstream 43505 7857850 ~ 7858075 (-) True G112779
TU152042 lncRNA downstream 45691 7855672 ~ 7855889 (-) True G112778
TU152025 lncRNA downstream 99028 7802340 ~ 7802552 (-) True G112764
TU151996 lncRNA downstream 167204 7710610 ~ 7734376 (-) True G112738
TU151970 lncRNA downstream 291346 7608900 ~ 7610234 (-) True G112716
TU152172 lncRNA upstream 20341 7924102 ~ 7926192 (-) True G112887
TU152162 lncRNA upstream 60678 7964439 ~ 7966305 (-) True G112877
TU152161 lncRNA upstream 63672 7967433 ~ 7969334 (-) True G112876
TU152205 lncRNA upstream 140349 8044110 ~ 8045481 (-) True G112902
TU152206 lncRNA upstream 152841 8056602 ~ 8060033 (-) True G112903
XM_039814952.1 mRNA downstream 31463 7866394 ~ 7870117 (-) True shhb
XM_039816718.1 mRNA downstream 64634 7817747 ~ 7836946 (-) False cnpy1
XM_039816716.1 mRNA downstream 64773 7817747 ~ 7836807 (-) True cnpy1
XM_039816719.1 mRNA downstream 65205 7817747 ~ 7836375 (-) False cnpy1
XM_039816538.1 mRNA downstream 133744 7741684 ~ 7767836 (-) False paxip1
XM_039814957.1 mRNA upstream 444 7904205 ~ 7938777 (-) False asph
XM_039814959.1 mRNA upstream 444 7904205 ~ 7932255 (-) False asph
XM_039814960.1 mRNA upstream 444 7904205 ~ 7929938 (-) False asph
XM_039814958.1 mRNA upstream 444 7904205 ~ 7929938 (-) False asph
XM_039814956.1 mRNA upstream 444 7904205 ~ 7929938 (-) False asph
unassigned_transcript_534 other downstream 1673796 6227703 ~ 6227784 (-) True trnas-uga_20
unassigned_transcript_533 other downstream 1674834 6226665 ~ 6226746 (-) True trnas-uga_19
unassigned_transcript_532 other downstream 1680483 6221016 ~ 6221097 (-) True trnas-uga_18
unassigned_transcript_531 other downstream 1681046 6220453 ~ 6220534 (-) True trnas-uga_17
unassigned_transcript_530 other downstream 1681626 6219873 ~ 6219954 (-) True trnas-uga_16
unassigned_transcript_537 other upstream 583706 8487467 ~ 8487539 (-) True trnak-uuu_16
TU152428 other upstream 876691 8780452 ~ 8790042 (-) True G113070
unassigned_transcript_538 other upstream 968673 8872434 ~ 8872505 (-) True trnag-ucc_9
unassigned_transcript_540 other upstream 969649 8873410 ~ 8873482 (-) True trnak-cuu_1
unassigned_transcript_547 other upstream 988170 8891931 ~ 8892004 (-) True trnan-guu_6

Expression Profile