RNA id: XR_005640692.1


Basic Information

Item Value
RNA id XR_005640692.1
length 999
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id LOC120568255
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8393511 ~ 8399327 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tcacaatttttattttctaattgTAAGTATCAGTGAGAACTGGAATTATTCAAGTAAAACTATATATGTCATTCATGtaataaataaactgtgtgGGAAGAGTAagttttattatgtattttcacATAATATTCAAAGGTTTCATAGTCATTGCACATGAACTTACAAATACCAAGTAAGTTTAAATACTGTTGGCGTTTTTCGAATGCGCGCATGCGCCATGTGACGCGCAAACAGGACGCATGCGCTTCGTTGTCCGCCAAAACACAAGAAGACGACGATGGAGTTCAGGTTAAATGGAGACAGGAGCAGCTAAATCATCTTAAAGCCCCAATgcaacaactttaaatttgacAGAGTGCCCTCTCAAGCAGCCACAACAGCAAGCTGTGTCACAAGCAAAGCTGGCAAttcagCCTCCACCGGAAAAGTTCTCCTGCTACAGCATTTGATTTGAATGGCTAATGTAAGAATATCAGCAGAGAGGAAGCTCAAAAGGACCAGGCTGAGCAAGTCCTAAGGATCTGTGTCTTCCACACAAGTGAAGAAGATGAAGTTGCATCCGAAACTGATGTCGATTGTTATTGAAGGGCATGAGGTACTTGACAACTGTGGAAGTGTTGCAAAAGACTGTCTCCTGCTCGTAGGCATCATTTATGCCATGAACTTGAAAAACGAAGTACACTTTTGAAAATTTTAAAAGCTAAACAAAACTTATAACTTGAATGCACATGTTTGACCCATGAGTTGTCATTTCAAAGAGGGcgctaaaagaaaaatatggCACAGTTGTTTATGTGGCTATTTgtctattttcttatttttctctcGTTTTAATgatgtagtttttattttaacttgttGCACTGTATTAAACATGTGGCCATGTAGAGTGGCTAAGTTGTggggacaaaagaaaagaagttaGATCAGCATTTTCAAGTCAAACCAGAGGTTCTCAACTGGTGGGTCGTGGGGCCATTTTCAATGGGTCACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152282 lncRNA upstream 2020 8389386 ~ 8391491 (+) True G112966
TU152263 lncRNA upstream 51528 8341330 ~ 8341983 (+) True G112949
TU152251 lncRNA upstream 63224 8326727 ~ 8330287 (+) False G112940
TU152252 lncRNA upstream 63224 8328105 ~ 8330287 (+) False G112940
TU152250 lncRNA upstream 65912 8326727 ~ 8327599 (+) True G112940
TU152294 lncRNA downstream 114086 8511090 ~ 8516736 (+) True G112975
TU152317 lncRNA downstream 173462 8570466 ~ 8570735 (+) True G112995
TU152326 lncRNA downstream 231568 8628572 ~ 8632174 (+) False G112999
TU152327 lncRNA downstream 231568 8628572 ~ 8654614 (+) False G112999
TU152328 lncRNA downstream 231568 8628572 ~ 8639247 (+) False G112999
XM_039816300.1 mRNA upstream 20073 8348359 ~ 8373438 (+) True gad3
XM_039815641.1 mRNA upstream 180919 8202224 ~ 8212592 (+) False tmem68
XM_039815640.1 mRNA upstream 180919 8202339 ~ 8212592 (+) True tmem68
XM_039816551.1 mRNA upstream 217557 8164406 ~ 8175954 (+) True blvra
XM_039816763.1 mRNA upstream 331411 8044004 ~ 8062100 (+) True cdc14aa
XM_039815646.1 mRNA downstream 9925 8406929 ~ 8510408 (+) True LOC120568257
XM_039815645.1 mRNA downstream 9925 8406929 ~ 8510408 (+) False LOC120568257
XM_039815647.1 mRNA downstream 9925 8406929 ~ 8510408 (+) False LOC120568257
XM_039815648.1 mRNA downstream 9925 8406929 ~ 8510408 (+) False LOC120568257
XM_039815650.1 mRNA downstream 9925 8406929 ~ 8510408 (+) False LOC120568257
TU152240 other upstream 80435 8309850 ~ 8313076 (+) True G112932
XR_005640625.1 other upstream 491224 7885498 ~ 7902287 (+) True dnai4
TU151912 other upstream 1357811 7035027 ~ 7035700 (+) True G112670
TU151896 other upstream 1384354 7007242 ~ 7009157 (+) True G112655
TU151756 other upstream 1622599 6741101 ~ 6770912 (+) True G112562
TU152286 other downstream 9936 8406940 ~ 8454416 (+) False LOC120568257
TU152347 other downstream 312325 8709329 ~ 8712997 (+) False atg10
TU152348 other downstream 312325 8709329 ~ 8712997 (+) False atg10
TU152352 other downstream 316261 8713265 ~ 8715271 (+) False atg10
TU152445 other downstream 416181 8813185 ~ 8817757 (+) False LOC120568881

Expression Profile