RNA id: TU152348


Basic Information

Item Value
RNA id TU152348
length 394
RNA type TUCP
GC content 0.56
exon number 4
gene id atg10
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8708661 ~ 8715271 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACATTGGTTCTTCAATACCAATACAAATCGTCCGGTCCGGTCCAGCAGTAAGATGAGCGGGTGTGCGCTGGATGAGGAGAACTTCCGGCGCTGCTGTCGGCTCCTCCTGCAGCAGTCGGAGCAGCTGAGGGACGGCTGGAGCTGGGAAGCCGTGCAGGGCTCAGAGGAGGGCTACCTTAAGAAGACTGCTCTCAGATCAGTCGTGGTCGACTCGAGCCCAGCGTGGGACCACGAAGGATCGGCTTCAGACTCGGAGCCACACACTTCCTGTCGCTCCTGGCCTGATCAGCAGGGACAGGAAGAGAAACAGGCTGGTATTGTTCTTTCAGTTGATGCCGACAGCATCAAAGGTGCCATAGAGGATGAGGAAGATGGTGAGGAAGATGAAGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152327 lncRNA upstream 54715 8628572 ~ 8654614 (+) False G112999
TU152328 lncRNA upstream 70082 8628572 ~ 8639247 (+) False G112999
TU152330 lncRNA upstream 73613 8628572 ~ 8635716 (+) True G112999
TU152326 lncRNA upstream 77155 8628572 ~ 8632174 (+) False G112999
TU152317 lncRNA upstream 138594 8570466 ~ 8570735 (+) True G112995
TU152392 lncRNA downstream 43884 8756881 ~ 8765533 (+) True G113042
TU152390 lncRNA downstream 52064 8765061 ~ 8765533 (+) False G113042
TU152403 lncRNA downstream 58150 8771147 ~ 8772044 (+) True G113050
TU152388 lncRNA downstream 76229 8789226 ~ 8795792 (+) False LOC120568415
TU152458 lncRNA downstream 113370 8826367 ~ 8827449 (+) True G113092
XM_039816924.1 mRNA upstream 4563 8665348 ~ 8704766 (+) False fam110b
XM_039816926.1 mRNA upstream 4563 8665348 ~ 8704766 (+) False fam110b
XM_039816925.1 mRNA upstream 4563 8677926 ~ 8704766 (+) True fam110b
XM_039816293.1 mRNA upstream 87653 8603405 ~ 8621676 (+) True LOC120568645
XM_039816928.1 mRNA downstream 4872 8717869 ~ 8736105 (+) True fam151a
XM_039816929.1 mRNA downstream 4872 8717869 ~ 8736105 (+) False fam151a
XM_039816930.1 mRNA downstream 4872 8717869 ~ 8736105 (+) False fam151a
XM_039816931.1 mRNA downstream 4872 8717869 ~ 8736105 (+) False fam151a
XM_039816932.1 mRNA downstream 4873 8717870 ~ 8736105 (+) False fam151a
TU152286 other upstream 254913 8406940 ~ 8454416 (+) False LOC120568257
TU152240 other upstream 396253 8309850 ~ 8313076 (+) True G112932
XR_005640625.1 other upstream 807042 7885498 ~ 7902287 (+) True dnai4
TU151912 other upstream 1673629 7035027 ~ 7035700 (+) True G112670
TU151896 other upstream 1700172 7007242 ~ 7009157 (+) True G112655
TU152352 other downstream 268 8713265 ~ 8715271 (+) False atg10
TU152445 other downstream 100188 8813185 ~ 8817757 (+) False LOC120568881
unassigned_transcript_539 other downstream 159615 8872612 ~ 8872684 (+) True trnav-aac_1
unassigned_transcript_541 other downstream 160697 8873694 ~ 8873767 (+) True trnan-guu
unassigned_transcript_542 other downstream 160975 8873972 ~ 8874045 (+) True trnan-guu_1

Expression Profile