RNA id: XM_039815930.1


Basic Information

Item Value
RNA id XM_039815930.1
length 2221
RNA type mRNA
GC content 0.50
exon number 11
gene id LOC120568415
representative False

Chromosome Information

Item Value
chromosome id NC_053122.1
NCBI id CM020919.1
chromosome length 39550354
location 8789209 ~ 8809459 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtggagggaagggggagacagaggaggGGAAGAGAATGCCTGGGAAGACAGGGAGTCGATCTGGGCACGGTGGCCGGGGTGCCAGCTCCAACTCCGGGGTTCTGATGGTCGGACCAAACTTCCGGGTCGGTAAGAAGATCGGCTGCGGGAACTTCGGAGAGCTACGACTTGGAAAGAACCTGTACACCAATGAATACGTGGCTATcaaactgGAGCCTATCAAGTCGCGGGCGCCACAGCTCCACCTAGAATATCGCTTCTACAAACAGCTGGGAAGTTCAGAGGGCGTACCACAGGTGTTTTACTTTGGACCGTGTGGTAAATACAATGCTATGGTTCTGGAGCTGCTGGGACCCAGCTTAGAAGATCTGTTTGACCTCTGTGACCGAACTTTCTCTCTAAAGACTGTACTCATGATAGCCATACAACTGATAACCCGTATGGAGTTTGTCCACACCAGAAGCCTGATCTATCGAGACGTGAAGCCTGAGAACTTCTTGGTGGGCCGACCCGGCTCCAAACGGCAACACACCATCCACATCATAGACTTTGGCCTAGCGAAAGAATACATAGACCCAGAGACCAAGAAACACATCCCATACAGAGAACACAAGAGTCTGACTGGGACTGCTAGATATATGAGCATCAACACACATCTGGGGAAAGAGCAAAGCAGGCGGGATGACCTGGAAGCTCTAGGCCACATGTTCATGTACTTCCTGCGAGGCAGCCTACCCTGGCAGGGACTCAAGGCTGACACTCTGAAAGAACGTTATCAGAAGATaggagacacaaagagagacacaccaATAGAGGTCCTCTGTGAAAACTTTCCAGAGATGGCCACCTACCTGCGGTACGTGCGTCGGCTGGACTTCTTCGAGAAGCCTGATTACGACTATCTGAGGAAACTCTTTACGGACCTCTTTGACAGAAACGGATACATCTTTGACTACCAGTATGACTGGACTGGAAAGCCACTGCCCACTCCTATTGGTCCAGTGGCCAGTGAGACTCCACTTCCAGCGAGCAACCGAGAGAAAGCACCCCAGACCAAAAACCAGTCTCCAGAGGGGAAAGGCAGTGAGTCGCAGCCCACTCCAGTGACCAATCGAGAGCTGCTGGGCTCCCACCTCACTGCTGATAGGCTGGGCGGGTCCGTCCAGGTGATGAGTTCAACCAATGGGGAGCTGAATACAGACGACCCCACTGCAGGACACTCCAACGCACCAATCACAGCCAATGCAGAGGTGGAAGTGGCTGATGATACCAAGTGCTGCTGTTTCttcaagaggaggaagaggaaagcgCTCCAGAGACACAAATGAAAACGAGACAAGAGAGAAACCCTGGtctctgtgttttctctctctctccttctctagCCCTCTTCATATAGCCCTCCCTTTATTCCTCCCTCAGTCCCCCTGTGACCCTCCTCCTCTGCTGTCCGAGGTCCCGTAGTTTACCTTGGGTCGGCTGGACTGGCTGGGCCACTGGGCAGCAGGATATGTTTGCTAAGCTGATCTGCTGGTTTCTACCGCTCTGGAATGACCCGACAGACAGTAACGTGTTTGCTGTTCCACCTCGCGGCTTTAATCGTGGACTAGCTGTGCCAACGGTGAAGTCTTCATGTATTTATGGtcacaaactgaactgaaactgGATCAACACAGACTGCTAAACCGTGGCCGCAAACAGTCGATAGACGGTAAAAGACAAGCTGACTTTTTACTGTCAGACTGGCTAGttctcttttgtgtttttatttttttttcttccttactGACTGGTTCAGAGGACAGAGAAGTGTATTTCTGAGGAGATACAGAAGAGAGGACAACAAAAGGACGGGAAGCAATGAGACTGTTggaccacacatgcacacagaacatacacacacacacacacacacacacacacacacacacacatatgtacaaaCACGCTGCACACTTTCTGGAGCTCATCATAAAGACACTTCATGGACAAACAGATGCAGCTCTCGCACATAGTCTATAAAGTTTTTATTCCCTAGGGTCAAAGGAAGTACAGCGCAACCGGCTTGGTCTATTTCCTGCAACGGATTGGGCTCGGTGTACTTCTCAGACACACTCACCCTCAGAGGAAAACCTCACATCCACCAGAatcaaaagttaaaaaagatgtttatgtGAAGACTATgctttttcctgttttaatttgtaacaaaaaaaaaaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU152388 lncRNA upstream 32 8789226 ~ 8795792 (+) False LOC120568415
TU152403 lncRNA upstream 23780 8771147 ~ 8772044 (+) True G113050
TU152392 lncRNA upstream 30291 8756881 ~ 8765533 (+) True G113042
TU152390 lncRNA upstream 30291 8765061 ~ 8765533 (+) False G113042
TU152353 lncRNA upstream 79284 8710317 ~ 8716540 (+) True G113016
TU152458 lncRNA downstream 16908 8826367 ~ 8827449 (+) True G113092
TU152461 lncRNA downstream 17386 8826845 ~ 8827449 (+) False G113092
TU152462 lncRNA downstream 17386 8826845 ~ 8827409 (+) False G113092
TU152520 lncRNA downstream 135018 8944477 ~ 9002568 (+) False G113130
TU152521 lncRNA downstream 146419 8955878 ~ 8957272 (+) True G113131
XM_039816928.1 mRNA upstream 59719 8717869 ~ 8736105 (+) True fam151a
XM_039816628.1 mRNA downstream 3438 8812897 ~ 8825811 (+) True LOC120568881
XM_039815903.1 mRNA downstream 61282 8870741 ~ 8915851 (+) False LOC120568389
XM_039815901.1 mRNA downstream 61283 8870742 ~ 8920465 (+) True LOC120568389
XM_039815900.1 mRNA downstream 61283 8870742 ~ 8920465 (+) False LOC120568389
XM_039815905.1 mRNA downstream 86480 8895939 ~ 8900204 (+) False pdca
TU152352 other upstream 80553 8713265 ~ 8715271 (+) False atg10
TU152347 other upstream 82827 8709329 ~ 8712997 (+) False atg10
TU152348 other upstream 82827 8709329 ~ 8712997 (+) False atg10
TU152286 other upstream 341408 8406940 ~ 8454416 (+) False LOC120568257
TU152240 other upstream 482748 8309850 ~ 8313076 (+) True G112932
TU152445 other downstream 3726 8813185 ~ 8817757 (+) False LOC120568881
unassigned_transcript_539 other downstream 63153 8872612 ~ 8872684 (+) True trnav-aac_1
unassigned_transcript_541 other downstream 64235 8873694 ~ 8873767 (+) True trnan-guu
unassigned_transcript_542 other downstream 64513 8873972 ~ 8874045 (+) True trnan-guu_1
unassigned_transcript_543 other downstream 64846 8874305 ~ 8874378 (+) True trnan-guu_2

Expression Profile